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Added optional SC tag to GFA2, similar to GFA1.2 + readme update #116
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Commits on Apr 7, 2022
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added gfastats to the list of tools supporting gfa2 and proposed spec…
…ification for cuts in segments As discussed today with @lh3, I am proposing to allow optional specification of subsequences directly in a path component, e.g. e.g. ptg000124l.1(397101:505533)+ We have devised a new tool (gfastats) that can take an agp file, for example from a scaffolding tool, and overlay the information on the original graph. When cuts are made within contigs, the segment is unmutable but we represent this event with coordinates associated to the component in the path, allowing to easily identify where cuts have occurred in the original segments
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Commits on May 23, 2022
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Commits on May 31, 2022
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Commits on Jun 2, 2022
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Commits on Jun 3, 2022
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Commits on Jun 7, 2022
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Commits on Jun 16, 2022
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Commits on Jun 17, 2022
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added shortcut spec also to GFA2
Based on the specifications of GFA1.2, a tag is added to indicate specific shortcut connections of assembly scaffolds (as opposed to missed overlaps or missing sequence during graph construction)
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