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Fix 1977 jbrowse archive creator #2101

Merged
merged 27 commits into from Apr 19, 2019
Merged

Fix 1977 jbrowse archive creator #2101

merged 27 commits into from Apr 19, 2019

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nathandunn
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@nathandunn nathandunn commented Mar 22, 2019 •
edited

fixes #1977

  • download any organism as a zip file of JBrowse !!!!!!
  • do simplest case when just exporting a track and adding it back to thee existing organism
  • duplicate genome and add track internally
    • just create Genome
    • allow download as well as its already do-able from the organism
  • do sequence when adding it with the genome sequence (duplicate the genome with just that track) and allow for a download
  • when selecting "JBROWSE" (and maybe also CHADO) only allow it to select all . . or explicitly have it do just that portion when exporting features

@nathandunn nathandunn added this to the 2.4.0 milestone Mar 22, 2019
@nathandunn nathandunn self-assigned this Mar 22, 2019
@nathandunn nathandunn added this to In progress in Apollo via automation Mar 22, 2019
@ghost ghost added the in progress label Mar 22, 2019
@nathandunn nathandunn added this to In progress in 2.4.0 Release via automation Apr 1, 2019
@nathandunn nathandunn moved this from In progress to To do in 2.4.0 Release Apr 7, 2019
@nathandunn nathandunn moved this from To do to Backlog in 2.4.0 Release Apr 7, 2019
@nathandunn nathandunn moved this from Backlog to To do in 2.4.0 Release Apr 10, 2019
@nathandunn nathandunn moved this from To do to In progress in 2.4.0 Release Apr 16, 2019
@nathandunn nathandunn moved this from In progress to To do in 2.4.0 Release Apr 16, 2019
@nathandunn
made some minor fixes
776b6eb
@nathandunn
merged in root
c33f7b7
@nathandunn
updated to write a lot of good stuff using the existing IOServices co…
be377e2 
…ntroller code
@nathandunn
added initial tar stuff
e28d3ff
@nathandunn
started to stub code for downloading (#2108)
066cc15 
* started to stub code for downloading

* fixed visibility

* updated

* updated some pieceses, but still need to do a proper clone

* it outputs gzip, but directly and not as attachment

* updated, but not quite working as intendent

* updated to write a lot of good stuff using the existing IOServices controller code
@nathandunn nathandunn moved this from To do to In progress in 2.4.0 Release Apr 19, 2019
@nathandunn nathandunn merged commit b1bc3cc into develop Apr 19, 2019
Apollo automation moved this from In progress to Done Apr 19, 2019
2.4.0 Release automation moved this from In progress to Done Apr 19, 2019
@ghost ghost removed the in progress label Apr 19, 2019
@cmdcolin cmdcolin deleted the fix-1977-jbrowse-archive-creator branch December 7, 2023 20:05
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leverage the jbrowse archive creator as an export type?
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