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| Original file line number | Diff line number | Diff line change |
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| --- | ||
| title: v2.2.2 Release | ||
| date: 2022-12-06 22:34:44 | ||
| tags: ['release', 'jbrowse 2'] | ||
| --- | ||
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| Hello all, this release contains a bugfix for the the circular view and | ||
| breakpoint split view with "TRA" type features not being displayed. See | ||
| release notes below for a couple other small bugfixes and enhancements. | ||
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| ## Downloads | ||
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| - [v2.2.2](https://github.com/GMOD/jbrowse-components/releases/tag/v2.2.2) | ||
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| To install JBrowse 2 for the web, you can download the link above, or you can | ||
| use the JBrowse CLI to automatically download the latest version. See the | ||
| [JBrowse web quick start](https://jbrowse.org/jb2/docs/quickstart_web) for more | ||
| details. | ||
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| See "Packages in this release" in the changelog for links to packages published | ||
| on NPM. | ||
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| ## 2.2.2 (2022-12-06) | ||
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| <details><summary>Packages in this release</summary> | ||
| <p> | ||
|
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| | Package | Download | | ||
| | --------------------------------------- | ----------------------------------------------------------------- | | ||
| | @jbrowse/core | https://www.npmjs.com/package/@jbrowse/core | | ||
| | @jbrowse/text-indexing | | | ||
| | @jbrowse/plugin-alignments | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | ||
| | @jbrowse/plugin-arc | | | ||
| | @jbrowse/plugin-authentication | https://www.npmjs.com/package/@jbrowse/plugin-authentication | | ||
| | @jbrowse/plugin-bed | https://www.npmjs.com/package/@jbrowse/plugin-bed | | ||
| | @jbrowse/plugin-breakpoint-split-view | | | ||
| | @jbrowse/plugin-circular-view | https://www.npmjs.com/package/@jbrowse/plugin-circular-view | | ||
| | @jbrowse/plugin-comparative-adapters | | | ||
| | @jbrowse/plugin-config | https://www.npmjs.com/package/@jbrowse/plugin-config | | ||
| | @jbrowse/plugin-data-management | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | ||
| | @jbrowse/plugin-dotplot-view | | | ||
| | @jbrowse/plugin-gccontent | https://www.npmjs.com/package/@jbrowse/plugin-gccontent | | ||
| | @jbrowse/plugin-gff3 | https://www.npmjs.com/package/@jbrowse/plugin-gff3 | | ||
| | @jbrowse/plugin-grid-bookmark | https://www.npmjs.com/package/@jbrowse/plugin-grid-bookmark | | ||
| | @jbrowse/plugin-gtf | https://www.npmjs.com/package/@jbrowse/plugin-gtf | | ||
| | @jbrowse/plugin-hic | | | ||
| | @jbrowse/plugin-jobs-management | | | ||
| | @jbrowse/plugin-legacy-jbrowse | https://www.npmjs.com/package/@jbrowse/plugin-legacy-jbrowse | | ||
| | @jbrowse/plugin-linear-comparative-view | | | ||
| | @jbrowse/plugin-linear-genome-view | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | ||
| | @jbrowse/plugin-lollipop | | | ||
| | @jbrowse/plugin-menus | | | ||
| | @jbrowse/plugin-protein | | | ||
| | @jbrowse/plugin-rdf | | | ||
| | @jbrowse/plugin-sequence | https://www.npmjs.com/package/@jbrowse/plugin-sequence | | ||
| | @jbrowse/plugin-spreadsheet-view | | | ||
| | @jbrowse/plugin-sv-inspector | | | ||
| | @jbrowse/plugin-svg | https://www.npmjs.com/package/@jbrowse/plugin-svg | | ||
| | @jbrowse/plugin-text-indexing | | | ||
| | @jbrowse/plugin-trackhub-registry | | | ||
| | @jbrowse/plugin-trix | https://www.npmjs.com/package/@jbrowse/plugin-trix | | ||
| | @jbrowse/plugin-variants | https://www.npmjs.com/package/@jbrowse/plugin-variants | | ||
| | @jbrowse/plugin-wiggle | https://www.npmjs.com/package/@jbrowse/plugin-wiggle | | ||
| | @jbrowse/cli | https://www.npmjs.com/package/@jbrowse/cli | | ||
| | @jbrowse/desktop | | | ||
| | @jbrowse/img | https://www.npmjs.com/package/@jbrowse/img | | ||
| | @jbrowse/react-circular-genome-view | https://www.npmjs.com/package/@jbrowse/react-circular-genome-view | | ||
| | @jbrowse/react-linear-genome-view | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | ||
| | @jbrowse/web | | | ||
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| </p> | ||
| </details> | ||
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| #### :rocket: Enhancement | ||
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| - Other | ||
| - [#3350](https://github.com/GMOD/jbrowse-components/pull/3350) Retain feature labels in compact display mode for SVG features, and allow turning off keeping feature description without feature label ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#3357](https://github.com/GMOD/jbrowse-components/pull/3357) Allow holding shift key to create rubberband selection on LGV ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#3363](https://github.com/GMOD/jbrowse-components/pull/3363) Create remove-track CLI command ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#3341](https://github.com/GMOD/jbrowse-components/pull/3341) Add BEDPE adapter type ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - `core` | ||
| - [#3359](https://github.com/GMOD/jbrowse-components/pull/3359) Fix typos in codebase using typos-cli ([@cmdcolin](https://github.com/cmdcolin)) | ||
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| #### :bug: Bug Fix | ||
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| - Other | ||
| - [#3377](https://github.com/GMOD/jbrowse-components/pull/3377) Fix rendering and clicking synteny features when using MainThreadRpc ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#3375](https://github.com/GMOD/jbrowse-components/pull/3375) Fix `jbrowse upgrade` CLI command overwriting config.json with --branch or --nightly options ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#3370](https://github.com/GMOD/jbrowse-components/pull/3370) Fix error with SNPCoverage not rendering MM tag modifications in some cases ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#3366](https://github.com/GMOD/jbrowse-components/pull/3366) Fix ability to use LGV synteny track on inverted alignments ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#3348](https://github.com/GMOD/jbrowse-components/pull/3348) Fix for breakpoint split view and circular view issues with `<TRA>` type entries in v2.2.1 ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - `core` | ||
| - [#3369](https://github.com/GMOD/jbrowse-components/pull/3369) Fix uncaught promise errors and add lint rule for catching these ([@cmdcolin](https://github.com/cmdcolin)) | ||
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| #### :memo: Documentation | ||
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| - [#3347](https://github.com/GMOD/jbrowse-components/pull/3347) Reduce number of quickstart guides ([@cmdcolin](https://github.com/cmdcolin)) | ||
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| #### :house: Internal | ||
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| - `core` | ||
| - [#3368](https://github.com/GMOD/jbrowse-components/pull/3368) Create base "Dialog" component to standardize dialogs across codebase ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - `text-indexing` | ||
| - [#3344](https://github.com/GMOD/jbrowse-components/pull/3344) fix yarn build error in Windows ([@Lilas-w](https://github.com/Lilas-w)) | ||
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| #### Committers: 2 | ||
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||
| - Colin Diesh ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [@Lilas-w](https://github.com/Lilas-w) |
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