Fix "Open synteny view at this position" when file contains CIGAR X/=…

… operators (#4436)
GMOD · Jun 13, 2024 · 63f9846 · 63f9846
1 parent 93271bc
commit 63f9846
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Showing 4 changed files with 830 additions and 840 deletions.
diff --git a/plugins/linear-comparative-view/src/LGVSyntenyDisplay/components/util.ts b/plugins/linear-comparative-view/src/LGVSyntenyDisplay/components/util.ts
@@ -33,7 +33,7 @@ function findPosInCigar(cigar: string[], startX: number) {
       mateX += len
     } else if (op === 'D') {
       featX += min
-    } else if (op === 'M') {
+    } else if (op === 'M' || op === '=' || op === 'X') {
       mateX += min
       featX += min
     }

diff --git a/...-genome-view/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap b/...-genome-view/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap
@@ -159,7 +159,7 @@ exports[`renders one track, one region 1`] = `
               />
             </button>
             <div
-              class="MuiAutocomplete-root css-1j0qgw8-MuiAutocomplete-root"
+              class="MuiAutocomplete-root css-ka7ti6-MuiAutocomplete-root"
               data-testid="autocomplete"
               style="width: 175px;"
             >
@@ -731,7 +731,7 @@ exports[`renders two tracks, two regions 1`] = `
               />
             </button>
             <div
-              class="MuiAutocomplete-root css-1j0qgw8-MuiAutocomplete-root"
+              class="MuiAutocomplete-root css-ka7ti6-MuiAutocomplete-root"
               data-testid="autocomplete"
               style="width: 283.990625px;"
             >

diff --git a/...nome-view/src/JBrowseLinearGenomeView/__snapshots__/JBrowseLinearGenomeView.test.tsx.snap b/...nome-view/src/JBrowseLinearGenomeView/__snapshots__/JBrowseLinearGenomeView.test.tsx.snap
@@ -248,7 +248,7 @@ exports[`<JBrowseLinearGenomeView /> renders successfully 1`] = `
                       />
                     </button>
                     <div
-                      class="MuiAutocomplete-root css-ia8vjw-MuiAutocomplete-root"
+                      class="MuiAutocomplete-root css-1y8r37a-MuiAutocomplete-root"
                       data-testid="autocomplete"
                       style="width: 175px;"
                     >