-
Notifications
You must be signed in to change notification settings - Fork 60
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
3 changed files
with
191 additions
and
1 deletion.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,109 @@ | ||
| --- | ||
| title: v2.3.3 Release | ||
| date: 2023-01-11 15:36:55 | ||
| tags: ['release', 'jbrowse 2'] | ||
| --- | ||
|
|
||
| Hello all, | ||
|
|
||
| This release adds that should improve performance. Internally, we removed the | ||
| concept of the linear synteny `renderer`. This refactoring also enabled | ||
| self-vs-self alignments to be rendered by the linear synteny view which | ||
| previously was not supported. | ||
|
|
||
| We also fixed the desktop app not being able to auto-update in v2.2.2-v2.3.2 | ||
|
|
||
| Please manually download this release! | ||
|
|
||
| ## Downloads | ||
|
|
||
| - [v2.3.3](https://github.com/GMOD/jbrowse-components/releases/tag/v2.3.3) | ||
|
|
||
| To install JBrowse 2 for the web, you can download the link above, or you can | ||
| use the JBrowse CLI to automatically download the latest version. See the | ||
| [JBrowse web quick start](https://jbrowse.org/jb2/docs/quickstart_web) for more | ||
| details. | ||
|
|
||
| See "Packages in this release" in the changelog for links to packages published | ||
| on NPM. | ||
|
|
||
| ## 2.3.3 (2023-01-11) | ||
|
|
||
| <details><summary>Packages in this release</summary> | ||
| <p> | ||
|
|
||
| | Package | Download | | ||
| | --------------------------------------- | ----------------------------------------------------------------- | | ||
| | @jbrowse/core | https://www.npmjs.com/package/@jbrowse/core | | ||
| | @jbrowse/text-indexing | | | ||
| | @jbrowse/plugin-alignments | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | ||
| | @jbrowse/plugin-arc | | | ||
| | @jbrowse/plugin-authentication | https://www.npmjs.com/package/@jbrowse/plugin-authentication | | ||
| | @jbrowse/plugin-bed | https://www.npmjs.com/package/@jbrowse/plugin-bed | | ||
| | @jbrowse/plugin-comparative-adapters | | | ||
| | @jbrowse/plugin-config | https://www.npmjs.com/package/@jbrowse/plugin-config | | ||
| | @jbrowse/plugin-data-management | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | ||
| | @jbrowse/plugin-dotplot-view | | | ||
| | @jbrowse/plugin-gccontent | https://www.npmjs.com/package/@jbrowse/plugin-gccontent | | ||
| | @jbrowse/plugin-gff3 | https://www.npmjs.com/package/@jbrowse/plugin-gff3 | | ||
| | @jbrowse/plugin-grid-bookmark | https://www.npmjs.com/package/@jbrowse/plugin-grid-bookmark | | ||
| | @jbrowse/plugin-gtf | https://www.npmjs.com/package/@jbrowse/plugin-gtf | | ||
| | @jbrowse/plugin-hic | | | ||
| | @jbrowse/plugin-jobs-management | | | ||
| | @jbrowse/plugin-legacy-jbrowse | https://www.npmjs.com/package/@jbrowse/plugin-legacy-jbrowse | | ||
| | @jbrowse/plugin-linear-comparative-view | | | ||
| | @jbrowse/plugin-linear-genome-view | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | ||
| | @jbrowse/plugin-lollipop | | | ||
| | @jbrowse/plugin-menus | | | ||
| | @jbrowse/plugin-rdf | | | ||
| | @jbrowse/plugin-sequence | https://www.npmjs.com/package/@jbrowse/plugin-sequence | | ||
| | @jbrowse/plugin-spreadsheet-view | | | ||
| | @jbrowse/plugin-text-indexing | | | ||
| | @jbrowse/plugin-variants | https://www.npmjs.com/package/@jbrowse/plugin-variants | | ||
| | @jbrowse/plugin-wiggle | https://www.npmjs.com/package/@jbrowse/plugin-wiggle | | ||
| | @jbrowse/cli | https://www.npmjs.com/package/@jbrowse/cli | | ||
| | @jbrowse/desktop | | | ||
| | @jbrowse/img | https://www.npmjs.com/package/@jbrowse/img | | ||
| | @jbrowse/react-circular-genome-view | https://www.npmjs.com/package/@jbrowse/react-circular-genome-view | | ||
| | @jbrowse/react-linear-genome-view | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | ||
| | @jbrowse/web | | | ||
|
|
||
| </p> | ||
| </details> | ||
|
|
||
| #### :rocket: Enhancement | ||
|
|
||
| - `core` | ||
| - [#3440](https://github.com/GMOD/jbrowse-components/pull/3440) "Show all | ||
| regions" for dotplot and synteny views and refactor synteny rendering RPC to | ||
| optimize scrolling ([@cmdcolin](https://github.com/cmdcolin)) | ||
|
|
||
| #### :bug: Bug Fix | ||
|
|
||
| - Other | ||
| - [#3451](https://github.com/GMOD/jbrowse-components/pull/3451) Fix | ||
| auto-updates on desktop not working since v2.2.2 | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - `core` | ||
| - [#3428](https://github.com/GMOD/jbrowse-components/pull/3428) Add missing | ||
| dependencies to embedded component package.json's | ||
| ([@cmdcolin](https://github.com/cmdcolin)) | ||
|
|
||
| #### :memo: Documentation | ||
|
|
||
| - [#3448](https://github.com/GMOD/jbrowse-components/pull/3448) Typescriptify | ||
| some docusaurus website code ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#3444](https://github.com/GMOD/jbrowse-components/pull/3444) Human vs mouse | ||
| synteny demo ([@cmdcolin](https://github.com/cmdcolin)) | ||
|
|
||
| #### :house: Internal | ||
|
|
||
| - `core` | ||
| - [#3445](https://github.com/GMOD/jbrowse-components/pull/3445) Typescriptify | ||
| more tests ([@cmdcolin](https://github.com/cmdcolin)) | ||
| - [#3443](https://github.com/GMOD/jbrowse-components/pull/3443) Restore | ||
| console mocks after running ([@cmdcolin](https://github.com/cmdcolin)) | ||
|
|
||
| #### Committers: 1 | ||
|
|
||
| - Colin Diesh ([@cmdcolin](https://github.com/cmdcolin)) |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters