Handle .bgz file extension for text-index

GMOD · Feb 9, 2022 · b0fa76e · b0fa76e
1 parent b43ed81
commit b0fa76e
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/products/jbrowse-cli/src/types/gff3Adapter.ts b/products/jbrowse-cli/src/types/gff3Adapter.ts
@@ -50,7 +50,7 @@ export async function* indexGff3(
   })
 
   const rl = readline.createInterface({
-    input: uri.endsWith('.gz')
+    input: uri.endsWith('.b?gz')
       ? fileDataStream.pipe(createGunzip())
       : fileDataStream,
   })

diff --git a/products/jbrowse-cli/src/types/gtfAdapter.ts b/products/jbrowse-cli/src/types/gtfAdapter.ts
@@ -49,7 +49,7 @@ export async function* indexGtf(
     progressBar.update(receivedBytes)
   })
 
-  const gzStream = uri.endsWith('.gz')
+  const gzStream = uri.endsWith('.b?gz')
     ? fileDataStream.pipe(createGunzip())
     : fileDataStream
 

diff --git a/products/jbrowse-cli/src/types/vcfAdapter.ts b/products/jbrowse-cli/src/types/vcfAdapter.ts
@@ -49,7 +49,7 @@ export async function* indexVcf(
     progressBar.update(receivedBytes)
   })
 
-  const gzStream = uri.endsWith('.gz')
+  const gzStream = uri.endsWith('.b?gz')
     ? fileDataStream.pipe(createGunzip())
     : fileDataStream