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Sequence search track #3159

Merged
merged 17 commits into from
Aug 25, 2022
Merged

Sequence search track #3159

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04638af
Cleanup sequence plugin registrations
cmdcolin Aug 23, 2022
fbf7d19
More seqtracksearch
cmdcolin Aug 23, 2022
2c67219
Run yarn upgrade
cmdcolin Aug 24, 2022
d1f708b
Sequence search track
cmdcolin Aug 24, 2022
67f33cc
Fix tsc
cmdcolin Aug 24, 2022
f791290
Misc
cmdcolin Aug 24, 2022
5cb44ed
Move around
cmdcolin Aug 24, 2022
7f1b959
Sequence search adapter
cmdcolin Aug 24, 2022
d32a4e2
Sequence search
cmdcolin Aug 24, 2022
bd47e78
Better help text
cmdcolin Aug 24, 2022
7e73fea
Update snaps
cmdcolin Aug 24, 2022
a235bc8
Updates
cmdcolin Aug 24, 2022
fd5c22a
Toggle forward/reverse
cmdcolin Aug 24, 2022
9a7f3a3
Updates
cmdcolin Aug 24, 2022
df3dbbd
Check range due to possible rendering oddity
cmdcolin Aug 24, 2022
e6c6518
Add case insensitive, fix regex style match length
cmdcolin Aug 25, 2022
ea4a636
NA
cmdcolin Aug 25, 2022
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18 changes: 12 additions & 6 deletions packages/core/ui/SanitizedHTML.tsx
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Original file line number Diff line number Diff line change
Expand Up @@ -55,12 +55,18 @@ export default function SanitizedHTML({ html }: { html: string }) {
// see https://github.com/cure53/DOMPurify/issues/317
// only have to add this once, and can't do it globally because dompurify
// not yet initialized at global scope
dompurify.addHook('afterSanitizeAttributes', node => {
if (node.tagName === 'A') {
node.setAttribute('rel', 'noopener noreferrer')
node.setAttribute('target', '_blank')
}
})
dompurify.addHook(
'afterSanitizeAttributes',
(node: {
tagName: string
setAttribute: (arg0: string, arg1: string) => void
}) => {
if (node.tagName === 'A') {
node.setAttribute('rel', 'noopener noreferrer')
node.setAttribute('target', '_blank')
}
},
)
}

return (
Expand Down
6 changes: 5 additions & 1 deletion packages/core/util/index.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -787,7 +787,11 @@ export const isElectron = /electron/i.test(
)

export function revcom(seqString: string) {
return complement(seqString).split('').reverse().join('')
return reverse(complement(seqString))
}

export function reverse(seqString: string) {
return seqString.split('').reverse().join('')
}

export const complement = (() => {
Expand Down
24 changes: 12 additions & 12 deletions plugins/alignments/src/AlignmentsFeatureDetail/__snapshots__/index.test.js.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -345,7 +345,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -379,7 +379,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -413,7 +413,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -447,7 +447,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -481,7 +481,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -515,7 +515,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -549,7 +549,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -583,7 +583,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -617,7 +617,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -651,7 +651,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -685,7 +685,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down Expand Up @@ -719,7 +719,7 @@ exports[`open up a widget 1`] = `
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
>
<span
class="MuiCheckbox-root MuiCheckbox-colorPrimary MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
>
<input
class="PrivateSwitchBase-input css-1m9pwf3"
Expand Down
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