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Add ability for CLI to recognize plaintext BED files #3173

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merged 2 commits into from
Sep 7, 2022

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@cmdcolin cmdcolin commented Sep 6, 2022

This just adds a small adapter to recognize BED files to the CLI, using BedAdapter

@github-actions github-actions bot added the needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) label Sep 6, 2022
@cmdcolin cmdcolin added enhancement New feature or request and removed needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) labels Sep 6, 2022
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codecov bot commented Sep 6, 2022

Codecov Report

Merging #3173 (e337ba8) into main (7ed81c2) will decrease coverage by 0.01%.
The diff coverage is 0.00%.

@@            Coverage Diff             @@
##             main    #3173      +/-   ##
==========================================
- Coverage   59.45%   59.44%   -0.02%     
==========================================
  Files         671      671              
  Lines       28628    28630       +2     
  Branches     6926     6927       +1     
==========================================
- Hits        17022    17020       -2     
- Misses      11284    11288       +4     
  Partials      322      322              
Impacted Files Coverage Δ
products/jbrowse-cli/src/commands/add-track.ts 62.21% <0.00%> (-0.58%) ⬇️
products/jbrowse-cli/src/types/common.ts 72.50% <ø> (ø)
plugins/hic/src/HicRenderer/HicRenderer.tsx 95.45% <0.00%> (-4.55%) ⬇️
products/jbrowse-web/src/util.ts 48.33% <0.00%> (ø)

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@cmdcolin cmdcolin merged commit 8685962 into main Sep 7, 2022
@cmdcolin cmdcolin deleted the plaintext_bed_cli branch September 7, 2022 21:40
@cmdcolin cmdcolin changed the title Adds ability for CLI to recognize plaintext BED files Add ability for CLI to recognize plaintext BED files Sep 7, 2022
cmdcolin added a commit that referenced this pull request Sep 14, 2022
* Add plaintext bed recognition to cli

* Remove inaccurate comments
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