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Fix CRAM mismatches calculation regression in v2.2.0 #3342

Merged
merged 5 commits into from
Nov 21, 2022
Merged

Fix CRAM mismatches calculation regression in v2.2.0 #3342

merged 5 commits into from
Nov 21, 2022

Commits on Nov 21, 2022

  1. Fix regression on CIGAR/mismatch generation in CRAM files

    @cmdcolin
    cmdcolin committed Nov 21, 2022
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  2. Rename last_pos to lastPos

    @cmdcolin
    cmdcolin committed Nov 21, 2022
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  3. Small test harness for readfeatures

    @cmdcolin
    cmdcolin committed Nov 21, 2022
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  4. Make sure mismatches and cigar match between bam and cram

    @cmdcolin
    cmdcolin committed Nov 21, 2022
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  5. Add test files

    @cmdcolin
    cmdcolin committed Nov 21, 2022
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