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Fix for breakpoint split view and circular view issues with <TRA> type entries in v2.2.1 #3348

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merged 1 commit into from
Nov 23, 2022

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cmdcolin
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v2.2.1 included an update to @gmod/vcf that failed to parse breakends properly (GMOD/vcf-js#95). This was fixed in GMOD/vcf-js#97 and included here

@github-actions github-actions bot added the needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) label Nov 23, 2022
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specific to VCF that uses e.g. <TRA> in the ALT field, which one of the skbr3 example vcf does

@cmdcolin cmdcolin added bug Something isn't working and removed needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) labels Nov 23, 2022
@cmdcolin cmdcolin changed the title Fix for breakpoint split view and circular view issues in v2.2.1 Fix for breakpoint split view and circular view issues with <TRA> type entries in v2.2.1 Nov 23, 2022
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codecov bot commented Nov 23, 2022

Codecov Report

Merging #3348 (08f756f) into main (a0df793) will increase coverage by 0.00%.
The diff coverage is n/a.

@@           Coverage Diff           @@
##             main    #3348   +/-   ##
=======================================
  Coverage   59.17%   59.17%           
=======================================
  Files         751      751           
  Lines       29277    29277           
  Branches     7085     7085           
=======================================
+ Hits        17325    17326    +1     
+ Misses      11758    11757    -1     
  Partials      194      194           
Impacted Files Coverage Δ
plugins/hic/src/HicRenderer/HicRenderer.tsx 95.45% <0.00%> (-4.55%) ⬇️
plugins/variants/src/VcfTabixAdapter/VcfFeature.ts 82.00% <0.00%> (+3.00%) ⬆️

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