Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add note to user guide about variant callers that can be used for SV inspector #3383

Merged
merged 1 commit into from
Dec 7, 2022

Conversation

cmdcolin
Copy link
Collaborator

@cmdcolin cmdcolin commented Dec 7, 2022

No description provided.

@github-actions github-actions bot added the needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) label Dec 7, 2022
@cmdcolin cmdcolin added documentation and removed needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) labels Dec 7, 2022
@scottcain scottcain self-requested a review December 7, 2022 22:39
Copy link
Member

@scottcain scottcain left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Perfect! Thanks for doing this.

@cmdcolin
Copy link
Collaborator Author

cmdcolin commented Dec 7, 2022

sure thing, these types of doc updates are very useful for contextualizing how to get your data into jbrowse

@cmdcolin
Copy link
Collaborator Author

cmdcolin commented Dec 7, 2022

as long as we're here, we should also add support for more types of variants to be displayed in the circular view/breakpoint split view. currently, as noted in this PR, it is just TRA and breakends, but rendering (perhaps, focusing on large) deletions,insertions, and inversions would be useful also. mildly related issue #672

@cmdcolin
Copy link
Collaborator Author

cmdcolin commented Dec 7, 2022

merge this for now though :)

@cmdcolin cmdcolin merged commit 91d6e82 into main Dec 7, 2022
@cmdcolin cmdcolin deleted the docs_sv_inspector branch December 7, 2022 23:18
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants