Restore console mocks after running

[cmdcolin]

Fixes #3425

Typescriptifies some tests and tries to isolate the console mocking to a single test in most cases

[codecov]

Codecov Report

Merging #3443 (d66b1d3) into main (89ba904) will increase coverage by 0.12%.
The diff coverage is 97.61%.

@@            Coverage Diff             @@
##             main    #3443      +/-   ##
==========================================
+ Coverage   61.38%   61.50%   +0.12%     
==========================================
  Files         822      821       -1     
  Lines       29516    29448      -68     
  Branches     7089     7072      -17     
==========================================
- Hits        18119    18113       -6     
+ Misses      11226    11172      -54     
+ Partials      171      163       -8     

Impacted Files	Coverage Δ
packages/core/ui/FatalErrorDialog.tsx	75.00% <ø> (-9.62%)	⬇️
...ns/variants/src/VcfTabixAdapter/VcfTabixAdapter.ts	91.66% <ø> (-0.18%)	⬇️
...ircular-genome-view/src/createModel/createModel.ts	37.50% <ø> (ø)
...-linear-genome-view/src/createModel/createModel.ts	38.46% <ø> (ø)
...ins/data-management/src/PluginStoreWidget/index.ts	80.00% <80.00%> (-20.00%)	⬇️
packages/core/PluginManager.ts	89.35% <100.00%> (-0.77%)	⬇️
...s/data-management/src/AddConnectionWidget/index.ts	100.00% <100.00%> (ø)
...lugins/data-management/src/AddTrackWidget/index.ts	100.00% <100.00%> (ø)
...ement/src/HierarchicalTrackSelectorWidget/index.ts	100.00% <100.00%> (ø)
plugins/data-management/src/index.ts	100.00% <100.00%> (+5.00%)	⬆️
... and 6 more

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[cmdcolin]

also removes plugins/protein, it is unused, and can be revived if particular function needs adding if needed