Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix subfeature refNames on BED and BEDTabix parsers #4158

Merged
merged 1 commit into from Jan 2, 2024
Merged

Conversation

cmdcolin
Copy link
Collaborator

@cmdcolin cmdcolin commented Jan 2, 2024

Adds a refName field to all subfeatures.

Fixes #4156

An alternative could potentially be done so that the subfeatures always look at their parent feature for the refName but this is interim or easy fix

Copy link

codecov bot commented Jan 2, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (bdf83ec) 63.03% compared to head (206d269) 63.04%.

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #4158   +/-   ##
=======================================
  Coverage   63.03%   63.04%           
=======================================
  Files        1067     1067           
  Lines       31101    31102    +1     
  Branches     7428     7428           
=======================================
+ Hits        19605    19608    +3     
+ Misses      11327    11323    -4     
- Partials      169      171    +2     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@cmdcolin cmdcolin changed the title Fix bed and bedtabix parser subfeature refNames Fix subfeature refNames on BED and BEDTabix parsers Jan 2, 2024
@cmdcolin cmdcolin merged commit a386d3f into main Jan 2, 2024
10 checks passed
@cmdcolin cmdcolin deleted the fix_bed_refname branch January 2, 2024 19:18
@cmdcolin cmdcolin added the bug Something isn't working label Jan 4, 2024
@cmdcolin cmdcolin mentioned this pull request Jan 4, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
1 participant