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Add ability to render only snpcoverage in jbrowse-img #4219

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merged 2 commits into from Feb 19, 2024
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example usage

jb2export --fasta file.fa --bam file.bam snpcov height:1000

renders just the snpcov

requested on office hours

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codecov bot commented Feb 19, 2024

Codecov Report

Attention: 2 lines in your changes are missing coverage. Please review.

❗ No coverage uploaded for pull request base (main@cdd6716). Click here to learn what that means.

❗ Current head ca3e30f differs from pull request most recent head 2719fed. Consider uploading reports for the commit 2719fed to get more accurate results

Files Patch % Lines
products/jbrowse-img/src/renderRegion.tsx 75.00% 1 Missing and 1 partial ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main    #4219   +/-   ##
=======================================
  Coverage        ?   63.00%           
=======================================
  Files           ?     1071           
  Lines           ?    31207           
  Branches        ?     7461           
=======================================
  Hits            ?    19663           
  Misses          ?    11369           
  Partials        ?      175           

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@cmdcolin cmdcolin changed the title Render only snpcoverage from alignments track from jbrowse-img Add ability to render only snpcoverage in jbrowse-img Feb 19, 2024
@cmdcolin cmdcolin merged commit 86e5ac8 into main Feb 19, 2024
@cmdcolin cmdcolin deleted the snpcov_jbimg branch February 19, 2024 14:05
@cmdcolin cmdcolin added the enhancement New feature or request label Feb 19, 2024
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