More consolidation

GMOD · Oct 18, 2018 · 365fa21 · 365fa21
1 parent 29964b7
commit 365fa21
Show file tree

Hide file tree

Showing 3 changed files with 27 additions and 261 deletions.
diff --git a/src/JBrowse/View/Track/PairedReads.js b/src/JBrowse/View/Track/PairedReads.js
diff --git a/src/JBrowse/View/Track/_AlignmentsMixin.js b/src/JBrowse/View/Track/_AlignmentsMixin.js
@@ -27,7 +27,33 @@ return declare([ MismatchesMixin, NamedFeatureFiltersMixin ], {
      * @returns {HTMLElement} feature detail page HTML
      */
     defaultFeatureDetail: function( /** JBrowse.Track */ track, /** Object */ f, /** HTMLElement */ div ) {
-        console.log('here')
+        let container
+        if(f.pairedFeature()) {
+            container = dojo.create('div', {
+                className: 'detail feature-detail feature-detail-'+track.name.replace(/\s+/g,'_').toLowerCase(),
+                style: { width: '1000px' }
+            });
+            dojo.place('<div><h1>Paired read details</h1></div><br />', container)
+            var flexContainer = dojo.create('div', {
+                className: 'detail feature-detail feature-detail-'+track.name.replace(/\s+/g,'_').toLowerCase(),
+                style: {
+                    display: 'flex',
+                    'flex-direction': 'row'
+                }
+            }, container);
+            var c1 = dojo.create('div', { className: 'detail feature-detail' }, flexContainer);
+            var c2 = dojo.create('div', { className: 'detail feature-detail' }, flexContainer);
+            var ret = this.defaultAlignmentDetail(track, f.f1, c1)
+            var ret2 = this.defaultAlignmentDetail(track, f.f2, c2)
+            dojo.place(ret, c1)
+            dojo.place(ret2, c2)
+            return container;
+        } else {
+            container = this.defaultAlignmentDetail(track, f, div)
+        }
+        return container
+    },
+    defaultAlignmentDetail(track, f, div) {
         var container = dojo.create('div', {
             className: 'detail feature-detail feature-detail-'+track.name.replace(/\s+/g,'_').toLowerCase(),
             innerHTML: ''

diff --git a/src/JBrowse/View/Track/_PairedAlignmentsMixin.js b/src/JBrowse/View/Track/_PairedAlignmentsMixin.js