Make the trimming of <> happen in middle of string too

GMOD · Feb 15, 2018 · 62a03ec · 62a03ec
1 parent 3ab8b7a
commit 62a03ec
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/src/JBrowse/Store/SeqFeature/VCFTabix/Parser.js b/src/JBrowse/Store/SeqFeature/VCFTabix/Parser.js
@@ -232,7 +232,8 @@ return declare( null, {
         "DUP:TANDEM": { description: "Tandem duplication", so_term: 'copy_number_gain' },
         "DEL:ME": { description: "Deletion of mobile element relative to the reference" },
         "INS:ME": { description: "Insertion of a mobile element relative to the reference" },
-        "NON_REF": { description: "Represents any possible alternative allele at this location", so_term: "biological_region" }
+        "NON_REF": { description: "Represents any possible alternative allele at this location", so_term: 'alternate_sequence_site' },
+        "*": { description: "Represents any possible alternative allele at this location", so_term: 'alternate_sequence_site' }
     },
 
     /**
@@ -377,7 +378,7 @@ return declare( null, {
         if( ! alt )
             return 'no alternative alleles';
 
-        alt = alt.replace(/^<|>$/g,'');
+        alt = alt.replace(/<|>/g,'');
 
         var def = this.getVCFMetaData( 'alt', alt );
         return def && def.description ? alt+' - '+def.description : SO_term+" "+ref+" -> "+ alt;