Add test for CRAM renaming

GMOD · Dec 9, 2018 · 7b363bb · 7b363bb
1 parent 217fce2
commit 7b363bb
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diff --git a/tests/js_tests/main.js b/tests/js_tests/main.js
@@ -24,6 +24,7 @@ cjsRequire('./spec/FeatureLayout.spec.js')
 cjsRequire('./spec/BigWig.spec.js')
 cjsRequire('./spec/ConfigManager.spec.js')
 cjsRequire('./spec/BAM.spec.js')
+cjsRequire('./spec/CRAM.spec.js')
 cjsRequire('./spec/Util.spec.js')
 cjsRequire('./spec/AddFiles.spec.js')
 cjsRequire('./spec/GBrowseParser.spec.js')

diff --git a/tests/js_tests/spec/CRAM.spec.js b/tests/js_tests/spec/CRAM.spec.js
@@ -0,0 +1,92 @@
+/* global dojo */
+require([
+    'dojo/aspect',
+    'dojo/_base/declare',
+    'dojo/_base/array',
+    'JBrowse/Browser',
+    'JBrowse/FeatureFiltererMixin',
+    'JBrowse/Store/SeqFeature/CRAM',
+    'JBrowse/Model/XHRBlob',
+],
+function(
+    aspect,
+    declare,
+    array,
+    Browser,
+    FeatureFiltererMixin,
+    CRAMStore,
+    XHRBlob,
+) {
+
+
+
+describe( 'CRAM with volvox-sorted.cram', function() {
+              var b;
+              beforeEach( function() {
+                  var browser = new Browser({ unitTestMode: true, stores: {} })
+                  b = new CRAMStore({
+                                       browser: browser,
+                                       cram: new XHRBlob('../../sample_data/raw/volvox/volvox-sorted.cram'),
+                                       crai: new XHRBlob('../../sample_data/raw/volvox/volvox-sorted.cram.crai'),
+                                       refSeq: { name: 'ctgA', start: 1, end: 500001 }
+                                   });
+              });
+
+              it( 'constructs', function() {
+                      expect(b).toBeTruthy();
+                  });
+
+              it( 'loads some data contigA', function() {
+                      var loaded;
+                      var features = [];
+                      var done;
+                      aspect.after( b, 'loadSuccess', function() {
+                          loaded = true;
+                      });
+                      b.getFeatures({ start: 0, end: 50000, name: 'contigA' },
+                                 function( feature ) {
+                                     features.push( feature );
+                                 },
+                                 function() {
+                                     done = true;
+                                 },
+                          function(e) {
+                              console.error(e)
+                          }
+                               );
+                      waitsFor( function() { return done; }, 2000 );
+                      runs( function() {
+                                expect(features.length).toBeGreaterThan(1000);
+                            });
+                  });
+
+
+              it( 'loads some data ctgA', function() {
+                      var loaded;
+                      var features = [];
+                      var done;
+                      aspect.after( b, 'loadSuccess', function() {
+                          loaded = true;
+                      });
+                      b.getFeatures({ start: 0, end: 50000, name: 'ctgA' },
+                                 function( feature ) {
+                                     features.push( feature );
+                                 },
+                                 function() {
+                                     done = true;
+                                 },
+                          function(e) {
+                              console.error(e)
+                          }
+                               );
+                      waitsFor( function() { return done; }, 2000 );
+                      runs( function() {
+                                expect(features.length).toBeGreaterThan(1000);
+                            });
+                  });
+
+});
+
+
+});
+