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Update release-notes.md [skip ci]
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cmdcolin committed Dec 9, 2018
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Showing 1 changed file with 12 additions and 9 deletions.
21 changes: 12 additions & 9 deletions release-notes.md
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* Added `hideImproperPairs` filter for Alignments2/SNPCoverage tracks which
disambiguates from missing mate pairs (pull #1235, @cmdcolin)

* Added `useTS` coloring option for RNA-seq strandedness, similar to the `useXS`
that existed previously (pull #1235, @cmdcolin)

## Bug fixes

* Fixed issue with getting feature density from BAM files via the index stats
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* Small fix for issue where SNPCoverage would crash on some feature filters
(issue #1241, @cmdcolin)

* Fix issue where JBrowse Desktop was not able to access remote files (issue
* Fixed issue where JBrowse Desktop was not able to access remote files (issue
#1234, pull #1245, @cmdcolin)

* Fix issue where the Hierarchical track selector contained a bunch of blank
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* Fixed bug where some files were not being fetched properly when changing
refseqs. Thanks to @luke-c-sargent for the report (issue #1252)

* Fix storeTimeout on CRAM files being unused which can result in excessive
* Fixed storeTimeout on CRAM files being unused which can result in excessive
fetches (pull #1235, @cmdcolin)

* Fix issue where JBrowse would load the wrong area of the refseq on startup
* Fixed issue where JBrowse would load the wrong area of the refseq on startup
resulting in bad layouts and excessive data fetches. Thanks to @hkmoon,
@cmdcolin, and @garrettjstevens for debugging (issue #1190, pull #1235, pull
#1187)

* Fix issue where CRAM data could be displayed on the wrong refseq (issue #1273,
* Fixed issue where CRAM data could be displayed on the wrong refseq (issue #1273,
@cmdcolin)

* Fix issue where CRAM layout and mouseover would be glitchy due to ID collisions
on features (issue #1271, @cmdcolin)
* Fixed issue where CRAM layout and mouseover would be glitchy due to ID
collisions on features (issue #1271, @cmdcolin)

* Fix parsing of certain bigBed files that were hanging on track startup
* Fixed parsing of certain bigBed files that were hanging on track startup
(issue #1226, pull #1229, @cmdcolin)

* Added `useTS` coloring option for RNA-seq strandedness, similar to the `useXS`
that existed previously (pull #1235, @cmdcolin)
* Fixed issue where some parts of a CRAM file would not be displayed in JBrowse
due to a CRAM index parsing issue (@cmdcolin)

## Notable changes

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