Hide reads with incorrect alignments to restore the old filter that t…

…he missing mates filter previously was
GMOD · Nov 19, 2018 · ca28919 · ca28919
1 parent edfde94
commit ca28919
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/src/JBrowse/View/Track/_AlignmentsMixin.js b/src/JBrowse/View/Track/_AlignmentsMixin.js
@@ -219,6 +219,13 @@ return declare([ MismatchesMixin, NamedFeatureFiltersMixin ], {
                         return ! ( f.get('multi_segment_template') && f.get('multi_segment_next_segment_unmapped') );
                     }
                 },
+                hideIncorrectAlignment: {
+                    desc: 'Hide reads that are not correctly aligned',
+                    func: function( f ) {
+                        return ! ( f.get('multi_segment_template') && ! f.get('multi_segment_all_aligned') );
+                    }
+                },
+
                 hideUnmapped: {
                     desc: 'Hide unmapped reads',
                     func: function( f ) {