Add more inference and consistent types

GMOD · Oct 26, 2018 · cc2dd33 · cc2dd33
1 parent 57cf8a3
commit cc2dd33
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Showing 3 changed files with 7 additions and 4 deletions.
diff --git a/src/JBrowse/View/FeatureGlyph/Gene.js b/src/JBrowse/View/FeatureGlyph/Gene.js
@@ -22,7 +22,7 @@ _defaultConfig: function() {
         this.inherited(arguments),
         {
             transcriptType: 'mRNA',
-            noncodingType: ['ncRNA','transcript', 'lnc_RNA', 'lncRNA'],
+            noncodingType: ['ncRNA','transcript', 'lnc_RNA', 'lncRNA', 'miRNA'],
             style: {
                 transcriptLabelFont: 'normal 10px Univers,Helvetica,Arial,sans-serif',
                 transcriptLabelColor: 'black',

diff --git a/src/JBrowse/View/FeatureGlyph/UnprocessedTranscript.js b/src/JBrowse/View/FeatureGlyph/UnprocessedTranscript.js
@@ -1,11 +1,11 @@
 define([
            'dojo/_base/declare',
-           'dojo/_base/Color',
+           'dojo/_base/lang',
            'JBrowse/View/FeatureGlyph/Segments'
        ],
        function(
            declare,
-           Color,
+           lang,
            Segments
        ) {
 

diff --git a/src/JBrowse/View/Track/CanvasFeatures.js b/src/JBrowse/View/Track/CanvasFeatures.js
@@ -212,7 +212,10 @@ return declare(
         let guess = {
             'gene': 'Gene',
             'mRNA': 'ProcessedTranscript',
-            'transcript': 'ProcessedTranscript'
+            'ncRNA': 'UnprocessedTranscript',
+            'lncRNA': 'UnprocessedTranscript',
+            'lnc_RNA': 'UnprocessedTranscript',
+            'miRNA': 'UnprocessedTranscript'
         }[feature.get('type')]
 
         // otherwise, make it Segments if it has children,