Add plugins back to default build

GMOD · Jul 12, 2018 · d1e2ff2 · d1e2ff2
1 parent 372a87e
commit d1e2ff2
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Showing 3 changed files with 7 additions and 7 deletions.
diff --git a/plugins/NeatCanvasFeatures/README.md b/plugins/NeatCanvasFeatures/README.md
@@ -14,7 +14,7 @@ It applies intron hats and a gradient 'tubular' look to features and subfeatures
 For JBrowse 1.11.6+, copy the `NeatCanvasFeatures` directory to the `plugins` directory.
 Add this to appropriate **trackList.json** under the plugins section (create one if it doesn't exist):
 
-    "plugins": [ 
+    "plugins": [
          'NeatCanvasFeatures'
      ],
 

diff --git a/plugins/NeatHTMLFeatures/README.md b/plugins/NeatHTMLFeatures/README.md
@@ -19,7 +19,7 @@ due to difference between HTMLFeatures and DragableHTMLFeatures feature DOMs.
 For JBrowse 1.11.6+, copy the NeatHTMLFeatures directory to the 'plugins' directory.
 Add this to appropriate trackList.json under the plugins section (create one if it doesn't exist):
 
-    "plugins": [ 
+    "plugins": [
         'NeatHTMLFeatures'
     ],
 
@@ -31,10 +31,10 @@ Add this to `web-apps/jbrowse/plugins/WebApollo/json/annot.json`:
          "location" : "./plugins/WebApollo",
          "name" : "WebApollo"
       },
-	  {
-		 "location" : "./plugins/NeatHTMLFeatures",
-		 "name" : "NeatHTMLFeatures"
-	  }
+      {
+         "location" : "./plugins/NeatHTMLFeatures",
+         "name" : "NeatHTMLFeatures"
+      }
     ],
 
 

diff --git a/setup.sh b/setup.sh
@@ -171,7 +171,7 @@ log_echo -n "Formatting Volvox example data ...";
     >> sample_data/json/volvox/tracks.conf
 
     bin/add-json.pl '{ "dataset_id": "volvox", "include": [ "../../raw/volvox/functions.conf" ] }' sample_data/json/volvox/trackList.json
-    bin/add-json.pl '{ "dataset_id": "volvox", "plugins": [ "HideTrackLabels" ] }' sample_data/json/volvox/trackList.json
+    bin/add-json.pl '{ "dataset_id": "volvox", "plugins": [ "HideTrackLabels", "NeatCanvasFeatures", "NeatHTMLFeatures" ] }' sample_data/json/volvox/trackList.json
     bin/flatfile-to-json.pl --bed docs/tutorial/data_files/volvox_segment.bed --out sample_data/json/volvox --trackLabel ChromHMM --trackType CanvasFeatures --clientConfig '{"color": "{chromHMM}", "strandArrow": false}' --config '{"displayMode": "collapsed", "enableCollapsedMouseover": true, "category": "Miscellaneous" }';
     bin/generate-names.pl --safeMode -v --out sample_data/json/volvox;