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Update release-notes.md
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cmdcolin committed Jul 6, 2018
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## Minor improvements

* Added support for the CSI index format for VCF and BAM files! This format enables genomes

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@nathanhaigh

nathanhaigh Jul 9, 2018

Contributor

I think this feature addition would be seen as a major improvement to many in the plant world who have struggled getting traction for CSI support in modern genome browsers - As of this time, I'm quite sure JBrowse is the only genome browser to support CSI indexes.

with chromosomes longer than a gigabase to be used in JBrowse. To enable, use the

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@nathanhaigh

nathanhaigh Jul 9, 2018

Contributor

The BAI index actually has a limit of 229-1bp (~537 Mbases) on a given reference sequence - much less than the 1Gbp stated here. Therefore CSI become critical at a much shorter chromosome sequence length than stated here.

`csiUrlTemplate` config to point to the file. Thanks to Keiran Raine and others for
motivating this! (issue #926, pull #1086, @cmdcolin)

* Added a `dontRedispatch` option for GFF3Tabix stores. Example: set `dontRedispatch=region`
if there are `region` biotype features in the GFF that do not have subfeatures which will
speed up loading times significantly (issue #1076, pull #1084, @cmdcolin)

* Add auto-lower-casing to the feature.get('...') function, commonly used for callback
customizations. Now, for example, feature.get('ID') works as well as feature.get('id').
Thanks to @nvteja for motivating this! (issue #1068, pull #1074, @cmdcolin)

* Added cache-busting for track config files which actively prevents stale configuration files
from being loaded (pull #1080, @cmdcolin)

## Bug fixes

* Fixed a memory leak that was introduced in JBrowse 1.13.1 in generate-names.pl. Thanks to
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