Use feature filter to remove features with large insert sizes in view…

… as pairs mode
GMOD · Nov 16, 2018 · fe07528 · fe07528
1 parent f5e5eec
commit fe07528
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Showing 2 changed files with 6 additions and 5 deletions.
diff --git a/src/JBrowse/View/FeatureGlyph/PairedAlignment.js b/src/JBrowse/View/FeatureGlyph/PairedAlignment.js
@@ -89,9 +89,6 @@ layoutFeature(viewArgs, layout, feature) {
             rect.rect.t = 0
         }
     }
-    if(feature.get('end') - feature.get('start') > this.track.config.maxInsertSize) {
-        rect.l = Infinity
-    }
 
     return rect;
 }

diff --git a/src/JBrowse/View/Track/Alignments2.js b/src/JBrowse/View/Track/Alignments2.js
@@ -251,8 +251,12 @@ return declare( [ CanvasFeatureTrack, AlignmentsMixin ], {
         } else {
             this.inherited(arguments);
         }
-    }
-
+    },
 
+    constructor() {
+        this.addFeatureFilter(feat => {
+            return this.config.viewAsPairs && feat.get('end') - feat.get('start') < this.config.maxInsertSize
+        })
+    }
 });
 });