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Installation deprecated #59

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poutant1 opened this issue Jun 7, 2022 · 7 comments
Closed

Installation deprecated #59

poutant1 opened this issue Jun 7, 2022 · 7 comments

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@poutant1
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poutant1 commented Jun 7, 2022 •
edited

I'm having issues with installing the package. Trying to install the package using setup.py, I get

Processing dependencies for txt2hpo==2021.0 Searching for gensim==3.8.1 Reading https://pypi.org/simple/gensim/ Download error on https://pypi.org/simple/gensim/: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:997) -- Some packages may not be found! Couldn't find index page for 'gensim' (maybe misspelled?) Scanning index of all packages (this may take a while) Reading https://pypi.org/simple/ Download error on https://pypi.org/simple/: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:997) -- Some packages may not be found! No local packages or working download links found for gensim==3.8.1 error: Could not find suitable distribution for Requirement.parse('gensim==3.8.1')

Is this a problem with gensim or txt2hpo?

installation through pip gives

`Installing build dependencies ... error
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> [212 lines of output]
Collecting setuptools
Using cached setuptools-62.3.2-py3-none-any.whl (1.2 MB)
Collecting wheel
Using cached wheel-0.37.1-py2.py3-none-any.whl (35 kB)
Collecting cython>=0.25
Using cached Cython-0.29.30-py2.py3-none-any.whl (985 kB)
Collecting cymem<2.1.0,>=2.0.2
Using cached cymem-2.0.6-cp310-cp310-macosx_11_0_arm64.whl (30 kB)
Collecting preshed<3.1.0,>=3.0.2
Using cached preshed-3.0.6-cp310-cp310-macosx_11_0_arm64.whl (101 kB)
Collecting murmurhash<1.1.0,>=0.28.0
Using cached murmurhash-1.0.7-cp310-cp310-macosx_11_0_arm64.whl (19 kB)
Collecting thinc==7.4.0
Using cached thinc-7.4.0.tar.gz (1.3 MB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Collecting blis<0.5.0,>=0.4.0
Using cached blis-0.4.1.tar.gz (1.8 MB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Collecting wasabi<1.1.0,>=0.0.9
Using cached wasabi-0.9.1-py3-none-any.whl (26 kB)
Collecting srsly<1.1.0,>=0.0.6
Using cached srsly-1.0.5-cp310-cp310-macosx_10_9_universal2.whl
Collecting catalogue<1.1.0,>=0.0.7
Using cached catalogue-1.0.0-py2.py3-none-any.whl (7.7 kB)
Collecting numpy>=1.7.0
Using cached numpy-1.22.4-cp310-cp310-macosx_11_0_arm64.whl (12.8 MB)
Collecting plac<1.2.0,>=0.9.6
Using cached plac-1.1.3-py2.py3-none-any.whl (20 kB)
Collecting tqdm<5.0.0,>=4.10.0
Using cached tqdm-4.64.0-py2.py3-none-any.whl (78 kB)
Building wheels for collected packages: thinc, blis
Building wheel for thinc (setup.py): started
Building wheel for thinc (setup.py): finished with status 'error'
error: subprocess-exited-with-error

    × python setup.py bdist_wheel did not run successfully.
    │ exit code: 1
    ╰─> [32 lines of output]
        /Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
          warnings.warn(
        Traceback (most recent call last):
          File "<string>", line 2, in <module>
          File "<pip-setuptools-caller>", line 34, in <module>
          File "/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/thinc_94f9b50ea8df4fe28f30b0ef670e6c3e/setup.py", line 264, in <module>
            setup_package()
          File "/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/thinc_94f9b50ea8df4fe28f30b0ef670e6c3e/setup.py", line 201, in setup_package
            setup(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/__init__.py", line 86, in setup
            _install_setup_requires(attrs)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/__init__.py", line 80, in _install_setup_requires
            dist.fetch_build_eggs(dist.setup_requires)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/dist.py", line 861, in fetch_build_eggs
            resolved_dists = pkg_resources.working_set.resolve(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 789, in resolve
            dist = best[req.key] = env.best_match(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1075, in best_match
            return self.obtain(req, installer)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1087, in obtain
            return installer(requirement)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/dist.py", line 941, in fetch_build_egg
            return fetch_build_egg(self, req)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/installer.py", line 87, in fetch_build_egg
            wheel.install_as_egg(dist_location)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 96, in install_as_egg
            self._install_as_egg(destination_eggdir, zf)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 104, in _install_as_egg
            self._convert_metadata(zf, destination_eggdir, dist_info, egg_info)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 148, in _convert_metadata
            os.rename(dist_info, egg_info)
        OSError: [Errno 66] Directory not empty: '/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/thinc_94f9b50ea8df4fe28f30b0ef670e6c3e/.eggs/numpy-1.22.4-py3.10-macosx-10.9-universal2.egg/numpy-1.22.4.dist-info' -> '/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/thinc_94f9b50ea8df4fe28f30b0ef670e6c3e/.eggs/numpy-1.22.4-py3.10-macosx-10.9-universal2.egg/EGG-INFO'
        [end of output]
  
    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed building wheel for thinc
    Running setup.py clean for thinc
    Building wheel for blis (setup.py): started
    Building wheel for blis (setup.py): finished with status 'error'
    error: subprocess-exited-with-error
  
    × python setup.py bdist_wheel did not run successfully.
    │ exit code: 1
    ╰─> [31 lines of output]
        BLIS_COMPILER? None
        /Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
          warnings.warn(
        Traceback (most recent call last):
          File "<string>", line 2, in <module>
          File "<pip-setuptools-caller>", line 34, in <module>
          File "/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/blis_2c4c791d2a814128855adaa7496d734e/setup.py", line 239, in <module>
            setup(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/__init__.py", line 86, in setup
            _install_setup_requires(attrs)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/__init__.py", line 80, in _install_setup_requires
            dist.fetch_build_eggs(dist.setup_requires)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/dist.py", line 861, in fetch_build_eggs
            resolved_dists = pkg_resources.working_set.resolve(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 789, in resolve
            dist = best[req.key] = env.best_match(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1075, in best_match
            return self.obtain(req, installer)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1087, in obtain
            return installer(requirement)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/dist.py", line 941, in fetch_build_egg
            return fetch_build_egg(self, req)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/installer.py", line 87, in fetch_build_egg
            wheel.install_as_egg(dist_location)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 96, in install_as_egg
            self._install_as_egg(destination_eggdir, zf)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 104, in _install_as_egg
            self._convert_metadata(zf, destination_eggdir, dist_info, egg_info)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 148, in _convert_metadata
            os.rename(dist_info, egg_info)
        OSError: [Errno 66] Directory not empty: '/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/blis_2c4c791d2a814128855adaa7496d734e/.eggs/numpy-1.22.4-py3.10-macosx-10.9-universal2.egg/numpy-1.22.4.dist-info' -> '/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/blis_2c4c791d2a814128855adaa7496d734e/.eggs/numpy-1.22.4-py3.10-macosx-10.9-universal2.egg/EGG-INFO'
        [end of output]
  
    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed building wheel for blis
    Running setup.py clean for blis
    error: subprocess-exited-with-error
  
    × python setup.py clean did not run successfully.
    │ exit code: 1
    ╰─> [31 lines of output]
        BLIS_COMPILER? None
        /Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
          warnings.warn(
        Traceback (most recent call last):
          File "<string>", line 2, in <module>
          File "<pip-setuptools-caller>", line 34, in <module>
          File "/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/blis_2c4c791d2a814128855adaa7496d734e/setup.py", line 239, in <module>
            setup(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/__init__.py", line 86, in setup
            _install_setup_requires(attrs)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/__init__.py", line 80, in _install_setup_requires
            dist.fetch_build_eggs(dist.setup_requires)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/dist.py", line 861, in fetch_build_eggs
            resolved_dists = pkg_resources.working_set.resolve(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 789, in resolve
            dist = best[req.key] = env.best_match(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1075, in best_match
            return self.obtain(req, installer)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1087, in obtain
            return installer(requirement)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/dist.py", line 941, in fetch_build_egg
            return fetch_build_egg(self, req)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/installer.py", line 87, in fetch_build_egg
            wheel.install_as_egg(dist_location)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 96, in install_as_egg
            self._install_as_egg(destination_eggdir, zf)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 104, in _install_as_egg
            self._convert_metadata(zf, destination_eggdir, dist_info, egg_info)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 148, in _convert_metadata
            os.rename(dist_info, egg_info)
        OSError: [Errno 66] Directory not empty: '/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/blis_2c4c791d2a814128855adaa7496d734e/.eggs/numpy-1.22.4-py3.10-macosx-10.9-universal2.egg/numpy-1.22.4.dist-info' -> '/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/blis_2c4c791d2a814128855adaa7496d734e/.eggs/numpy-1.22.4-py3.10-macosx-10.9-universal2.egg/EGG-INFO'
        [end of output]
  
    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed cleaning build dir for blis
  Failed to build thinc blis
  Installing collected packages: wasabi, srsly, plac, murmurhash, cymem, wheel, tqdm, setuptools, preshed, numpy, cython, catalogue, blis, thinc
    Running setup.py install for blis: started
    Running setup.py install for blis: finished with status 'error'
    error: subprocess-exited-with-error
  
    × Running setup.py install for blis did not run successfully.
    │ exit code: 1
    ╰─> [31 lines of output]
        BLIS_COMPILER? None
        /Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
          warnings.warn(
        Traceback (most recent call last):
          File "<string>", line 2, in <module>
          File "<pip-setuptools-caller>", line 34, in <module>
          File "/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/blis_2c4c791d2a814128855adaa7496d734e/setup.py", line 239, in <module>
            setup(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/__init__.py", line 86, in setup
            _install_setup_requires(attrs)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/__init__.py", line 80, in _install_setup_requires
            dist.fetch_build_eggs(dist.setup_requires)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/dist.py", line 861, in fetch_build_eggs
            resolved_dists = pkg_resources.working_set.resolve(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 789, in resolve
            dist = best[req.key] = env.best_match(
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1075, in best_match
            return self.obtain(req, installer)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1087, in obtain
            return installer(requirement)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/dist.py", line 941, in fetch_build_egg
            return fetch_build_egg(self, req)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/installer.py", line 87, in fetch_build_egg
            wheel.install_as_egg(dist_location)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 96, in install_as_egg
            self._install_as_egg(destination_eggdir, zf)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 104, in _install_as_egg
            self._convert_metadata(zf, destination_eggdir, dist_info, egg_info)
          File "/Users/tuomas.poutanen/koodi/txt2hpo/venv/lib/python3.10/site-packages/setuptools/wheel.py", line 148, in _convert_metadata
            os.rename(dist_info, egg_info)
        OSError: [Errno 66] Directory not empty: '/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/blis_2c4c791d2a814128855adaa7496d734e/.eggs/numpy-1.22.4-py3.10-macosx-10.9-universal2.egg/numpy-1.22.4.dist-info' -> '/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-install-t6ymh64w/blis_2c4c791d2a814128855adaa7496d734e/.eggs/numpy-1.22.4-py3.10-macosx-10.9-universal2.egg/EGG-INFO'
        [end of output]
  
    note: This error originates from a subprocess, and is likely not a problem with pip.
  error: legacy-install-failure
  
  × Encountered error while trying to install package.
  ╰─> blis
  
  note: This is an issue with the package mentioned above, not pip.
  hint: See above for output from the failure.
  WARNING: You are using pip version 22.0.4; however, version 22.1.2 is available.
  You should consider upgrading via the '/Users/tuomas.poutanen/koodi/txt2hpo/venv/bin/python -m pip install --upgrade pip' command.
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.`
@jwhite3
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jwhite3 commented Jun 15, 2022

@poutant1 What version of python are you using when attempting the install?

@poutant1
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I'm currently using python 3.10.4

@jwhite3
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jwhite3 commented Jun 16, 2022

Got it.

Would you mind trying an install with python 3.9?

@poutant1
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Tried installation using both 3.9.9. and 3.9.4 but both fail on something that seems to be related to spacy installation.

`Writing /var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/easy_install-lomoy9z9/spacy-2.2.4/setup.cfg
Running spacy-2.2.4/setup.py -q bdist_egg --dist-dir /var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/easy_install-lomoy9z9/spacy-2.2.4/egg-dist-tmp-sudu5iwl
WARNING: The wheel package is not available.
ERROR: Command errored out with exit status 1:
command: /Users/tuomas.poutanen/.pyenv/versions/3.9.4/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-wheel-ehz69_9m/thinc/setup.py'"'"'; file='"'"'/private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-wheel-ehz69_9m/thinc/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-wheel-fjwc6fho
cwd: /private/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/pip-wheel-ehz69_9m/thinc/
Complete output (7 lines):
WARNING: The wheel package is not available.
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: setup.py --help [cmd1 cmd2 ...]
or: setup.py --help-commands
or: setup.py cmd --help

error: invalid command 'bdist_wheel'

ERROR: Failed building wheel for thinc
ERROR: Failed to build one or more wheels
error: Command '['/Users/tuomas.poutanen/.pyenv/versions/3.9.4/bin/python', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/var/folders/wp/j33q8lm90yx5crb6z4192vbw0000gn/T/easy_install-lomoy9z9/spacy-2.2.4/temp/tmpg6etocs1', '--quiet', 'thinc==7.4.0']' returned non-zero exit status 1.`

@jwhite3
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jwhite3 commented Jun 21, 2022

Got it thanks. Would you mind trying 3.9.2? I was able to successfully install with 3.9.2.

If that doesn't work for you, I'll do some more digging on this dependency issue.

@poutant1
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The installation is still not working. I'm trying to install it on my Mac OS with the M1 chip and using pyenv for virtual environment control. The problem is most likely due to spacy. For the time being I found another tool that does similar things and won't need this package.

@jwhite3 jwhite3 mentioned this issue Jun 28, 2022
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@jwhite3
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jwhite3 commented Jun 28, 2022

@poutant1 I'm sorry to hear that. We will continue to investigate

@jwhite3 jwhite3 closed this as completed Jun 28, 2022
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@jwhite3 @poutant1