LehmannN edited this page Jun 15, 2018 · 33 revisions

Eoulsan is a command line workflow engine for Next Generation Sequencing data analysis. Eoulsan is able to execute many high throughput sequencing workflows like RNA-Seq, ChIP-Seq or scRNASeq. It can be run either in standalone mode or in distributed mode using the Hadoop framework or a more standard job scheduler.

This wiki contains all the information needed to use Eoulsan and to develop plug-ins.

User documentation is available on Eoulsan website.

Basics to use Eoulsan

Tutorials

Using Eoulsan on a computational cluster

Frequently asked questions

See the FAQ page.

Basics to develop plug-ins for Eoulsan

See the Developer documentation.

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