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Required by Imperial (and most likely all phenome centres): requested by Jake Pearce/Nourredin Sadawi
Protocol type should be set to 'aliquoting' to allow standard parsing.
ISAcreator-1.7+ currently support multiple Sample Name occuring on the Assay Table
<field header="Sample Name" data-type="String" is-file-field="false" is-multiple-value="true" is-required="true" is-hidden="false" is-forced-ontology="false">
In case, ISA users were to prefer coding aliquoting event at the 'studySample' level, it would require
modifying ISA configuration to set the 'is_multiple_value' to 'true' in the studySample.xml file:
and amend the ISA java parser/validator, which seems confused if multiple 'Sample Name' header appear in that Table.
TODO: Check if and how ISA-API and ISA python validator/converter handle these representations
TODO: produce ISA-TAB files for testing
The text was updated successfully, but these errors were encountered:
Required by Imperial (and most likely all phenome centres): requested by Jake Pearce/Nourredin Sadawi
Protocol type should be set to 'aliquoting' to allow standard parsing.
ISAcreator-1.7+ currently support multiple Sample Name occuring on the Assay Table
<field header="Sample Name" data-type="String" is-file-field="false"
is-multiple-value="true" is-required="true" is-hidden="false" is-forced-ontology="false">
[INSTITUTION].Group-[GROUP_NO].Subject-[SUBJECT_NO].[SAMPLE_EXTRACT]
In case, ISA users were to prefer coding aliquoting event at the 'studySample' level, it would require
modifying ISA configuration to set the 'is_multiple_value' to 'true' in the studySample.xml file:
and amend the ISA java parser/validator, which seems confused if multiple 'Sample Name' header appear in that Table.
TODO: Check if and how ISA-API and ISA python validator/converter handle these representations
TODO: produce ISA-TAB files for testing
The text was updated successfully, but these errors were encountered: