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Workers - tar should not preserve the full paths in the archive #132

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deepakduggirala opened this issue Jan 5, 2024 · 1 comment
Open

Workers - tar should not preserve the full paths in the archive #132

deepakduggirala opened this issue Jan 5, 2024 · 1 comment
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@ryanlong89

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@deepakduggirala
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Extracting any archive on SDA created by our apps with tar xvf creates a directory with internals with original file paths.

zpool/xenium/temp/
zpool/xenium/temp/Xenium_V1_mouse_pup_outs.zip
...

Change the tar command in archive step to create tar with only relative file paths.

When extracted with tar xvf the expected structure is

Xenium_V1_mouse_pup_outs.zip
...
@ryanlong89 ryanlong89 self-assigned this Jan 11, 2024
@charlesbrandt
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Good call to raise this on the Bioloop project. I believe this may be related to this issue in Xenium as well: https://github.com/IUSCA/xenium/issues/11

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@deepakduggirala @charlesbrandt @ryanlong89