System.ComponentModel.Win32Exception (0x80004005):

[ssri28]

Hi Team,
I am getting error while running Canvas

"""
System.ComponentModel.Win32Exception (0x80004005): No such file or directory
at Interop.Sys.ForkAndExecProcess(String filename, String[] argv, String[] envp, String cwd, Boolean redirectStdin, Boolean redirectStdout, Boolean redirectStderr, Int32& lpChildPid, Int32& stdinFd, Int32& stdoutFd, Int32& stderrFd)
at System.Diagnostics.Process.StartCore(ProcessStartInfo startInfo)
at System.Diagnostics.Process.Start()
at Isas.Framework.WorkManagement.JobLaunching.BasicJobLauncher.d__8.MoveNext()
--- End of stack trace from previous location where exception was thrown ---
at System.Runtime.ExceptionServices.ExceptionDispatchInfo.Throw()
at System.Runtime.CompilerServices.TaskAwaiter.HandleNonSuccessAndDebuggerNotification(Task task)
at Isas.Framework.WorkManagement.JobLaunching.BasicJobLauncher.d__7.MoveNext()
"""
Commandline:
/home/ec2-user/data/Canvas-1.40.0.1613+master_x64/Canvas.dll SmallPedigree-WGS -b ES_MSC_HM2FCDSXX_L2.sorted.rmdup.bam --sample-b-allele-vcf ES_MSC_HM2FCDSXX_L2.HC.vcf --ploidy-vcf canvas_ploidy.vcf -o ES_MSC_cnv_2 -r /home/ec2-user/data/genome/hg19/hg38.fa -g /home/ec2-user/data/genome/hg19/ -f exclude_intervals.bed

I have attached the error log file and canvas log file
CanvasError.txt
CanvasLog.txt

[eroller]

does the command from CanvasLog.txt run by itself properly? This may be a problem with the dotnet version. What version is it? Maybe try running with an updated version?

[ssri28]

Hi, Thanks for reply.. canvas uses dotnet version 2 in linux to execute. So i am using dotnet version 2. Updated version is not suitable. Yeah the command is from canvas.

…

On Tue, 31 Mar, 2020, 9:48 PM Eric Roller, ***@***.***> wrote: does the command from CanvasLog.txt run by itself properly? This may be a problem with the dotnet version. What version is it? Maybe try running with an updated version? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#137 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AKXA3TRD554UDTKSFATZ643RKIJVTANCNFSM4LXTTYLA> .