Skip to content

Issues: KCCG/ClinSV

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

27 Open 32 Closed
27 Open 32 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

IGV hg38 fix
#63 opened Mar 26, 2024 by akiss-me
11
The igv.xml file outputted when using the grch38 ref genome is incorrect as it is based on grch37. Provide the appropriate igv.xml file dependent on ref genome.
#61 opened Mar 8, 2024 by J-Bradlee
No dots/lines in the coverage by chromosome view (CBCV) bug
#60 opened Jan 31, 2024 by Bin-Guan
@J-Bradlee
2
Offer a Successful singularity def file
#59 opened Jan 22, 2024 by fish2022Jul
Small issues in README: wrong instructions for running clinsv1.0
#58 opened Nov 30, 2023 by sunjh22
1
***** error exist status != 0 (35072), please check /app/project_folder/alignments/FR05812606/bw/sh/bigwig.q0.FR05812606.e for more information
#53 opened Mar 15, 2023 by mxiong2
1
Error in Lumpy.depth.joined.sh in ClinSV v0.9: "Illegal division by zero at /opt/clinsv/clinSV/scripts/add-depth-to-PE-SR-calls.pl line 130."
#51 opened Mar 7, 2023 by avanbeelen
2
problem when -p project dir given as relative location
#50 opened Mar 6, 2023 by EricDeveaud
1
master display 0.9 as version info
#49 opened Mar 6, 2023 by EricDeveaud
2
clinsv :: incorrect perl - shell escape
#46 opened Feb 15, 2023 by EricDeveaud
igv/sample.xml file writes wrong reference genome (37 instead of 38)
#43 opened Feb 5, 2023 by OlenaMaiakovska
2
more processes than available cores enhancement
#42 opened Jan 24, 2023 by EricDeveaud
9
exist status: 256 run on cnvnator stage
#41 opened Jan 20, 2023 by OlenaMaiakovska
1
INSTALL_b38.md :: ClinSV requires python2 AND python3
#40 opened Jan 19, 2023 by EricDeveaud
1
Error (exit status:256)
#39 opened Jan 13, 2023 by tomlodz
4
clinSV singularity issues
#38 opened Dec 13, 2022 by RichardCorbett
5
Why i get "-1" in the column "PAF1KG"
#37 opened Nov 8, 2022 by Sh1von
exist status: 512
#36 opened Jul 13, 2022 by vicrocodile
3
exist status 256 in lumpy.caller.joined
#35 opened Jul 5, 2022 by jezdip1
6
[ENH] ClinSV v1.1.0 enhancement
#27 opened May 26, 2022 by J-Bradlee
4 of 6 tasks
@J-Bradlee
4
Potential support for CRAM input enhancement
#26 opened Apr 20, 2022 by HudoGriz
6
Sampleinfo.txt error
#25 opened Apr 5, 2022 by gneedle1
9
the folder structure not configured correctly ?
#20 opened Jan 13, 2022 by ChengguoShen
useful tools, but could it be used for hg19 or other genome build?
#17 opened Dec 4, 2021 by lxsbch
5
Permission error?
#15 opened Oct 1, 2021 by Pharmacogenetecist
ProTip! no:milestone will show everything without a milestone.