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100 Open 536 Closed
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Issues list

In JSON output, inverted counters should be translated back rather than being ignored. Counters minor bug
#692 opened Mar 30, 2024 by feret
The Replay module ignores tokens Wishlist
#675 opened Sep 9, 2023 by jonathan-laurent
Trace, final print
#674 opened Sep 8, 2023 by hmedina
Trace, init, T0 Wishlist
#667 opened Jun 1, 2023 by hmedina
Provide a more user-friendly format for traces (follow up from #658) Wishlist
#663 opened May 6, 2023 by feret
7
False error from KaSa: mod, tokens, <- minor bug
#661 opened May 1, 2023 by hmedina
@plucky @feret @hmedina
16
Agent "identifiers" are recycled and so do not identify agents Wishlist
#659 opened Apr 20, 2023 by hmedina
3
Better documentation for kappa-library
#654 opened Mar 29, 2023 by jonathan-laurent
1
One shot perturbations ignore requested time KaSim Soundness
#643 opened Aug 11, 2022 by hmedina
The opam archive for version 4.0.0 seems to have changed
#636 opened Mar 24, 2021 by mseri
@pirbo
1
bug in kappy retrieval of snapshots with variables in their name
#632 opened Feb 4, 2021 by yarden
typos
#628 opened Sep 27, 2020 by vd1
feature request: have -mixture accept JSON format
#627 opened Aug 25, 2020 by yarden
inputs.ka invalid when contact map overconstraints observables defined KaSim Soundness
#625 opened Jul 11, 2020 by hmedina
3
Kappy release for Python 3.8 missing executables
#618 opened May 29, 2020 by bgyori
2
Error: don't use edit notation in observables Graphical User Interface minor bug
#617 opened May 29, 2020 by hmedina
@feret
$APPLY is not documented in the manual Documentation & Manual
#610 opened Feb 11, 2020 by hmedina
Inputs file, $STOP, snapshotfile, reproducibility issue KaSim
#608 opened Jan 21, 2020 by hmedina
GUI double-prints CM bonds into SVG, with black fill Graphical User Interface minor bug
#606 opened Sep 26, 2019 by hmedina
2
contact map could highlight bonds KaSa knows engage in polymerization Graphical User Interface Wishlist
#605 opened Sep 26, 2019 by hmedina
Contact map interactive mode doesn't allow hilighting self-loops Graphical User Interface
#602 opened Aug 23, 2019 by hmedina
documentation: manual doesn't describe trace format
#601 opened Aug 15, 2019 by yarden
4
feature wish/discussion: having complex size as observable Wishlist
#600 opened Aug 8, 2019 by yarden
2
Feature request: trace compression KaSim Wishlist
#599 opened Aug 5, 2019 by hmedina
7
feature request: generating JSON snapshots in compressed format (like gzip) Wishlist
#598 opened Aug 2, 2019 by yarden
2
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