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@Kari-Genomics-Lab

Kari Genomics Lab

We are a CS and Bioinformatics research group led by Prof. Lila Kari

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  1. iDeLUCS iDeLUCS Public

    Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences

    Python 13 1

  2. BarcodeBERT BarcodeBERT Public

    A pre-trained representation from a transformers model for inference on insect DNA barcoding data.

    Python 8 1

  3. Extreme_Env Extreme_Env Public

    This repository contains the representative DNA fragments and some source code used in the paper "Environment and taxonomy shape the genomic signature of prokaryotic extremophiles"

    Python 1

Repositories

Showing 6 of 6 repositories
  • iDeLUCS Public

    Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences

    Kari-Genomics-Lab/iDeLUCS’s past year of commit activity
    Python 13 MIT 1 4 4 Updated Jul 18, 2024
  • BarcodeBERT Public

    A pre-trained representation from a transformers model for inference on insect DNA barcoding data.

    Kari-Genomics-Lab/BarcodeBERT’s past year of commit activity
    Python 8 MIT 1 0 1 Updated Jul 16, 2024
  • kari-genomics-lab.github.io Public Forked from alshedivat/al-folio

    A beautiful, simple, clean, and responsive Jekyll theme for academics

    Kari-Genomics-Lab/kari-genomics-lab.github.io’s past year of commit activity
    HTML 0 MIT 10,789 0 0 Updated Jun 27, 2024
  • Extreme_Env Public

    This repository contains the representative DNA fragments and some source code used in the paper "Environment and taxonomy shape the genomic signature of prokaryotic extremophiles"

    Kari-Genomics-Lab/Extreme_Env’s past year of commit activity
    Python 1 0 0 0 Updated Nov 6, 2023
  • DeLUCS Public Forked from millanp95/DeLUCS

    This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.

    Kari-Genomics-Lab/DeLUCS’s past year of commit activity
    Python 1 11 0 0 Updated Aug 31, 2022
  • BlindKameris Public

    Semi-Supervised Extension of the Kameris Software https://pypi.org/project/kameris/

    Kari-Genomics-Lab/BlindKameris’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jul 8, 2020

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