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Merge pull request #182 from KarrLab/yosef_dev
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protein tests
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@yosefdroth
yosefdroth committed Feb 25, 2020
2 parents bb3fd0e + fc7f7c5 commit b9317bd
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206 changes: 206 additions & 0 deletions src/__tests__/fixtures/protein-abundances-6-phosphofructo-2-kinase.json
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[
{
"abundances": [
{
"abundance": "2.04",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "4.58",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "69.0",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "164",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "68.3",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "73.2",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "11.9",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "16.7",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "149",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "21.1",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "31.5",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "37.9",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "16.0",
"organ": "WHOLE_ORGANISM"
}
],
"canonical_sequence": "MFKPVDFSETSPVPPDIDLAPTQSPHHVAPSQDSSYDLLSRSSDDKIDAEKGPHDELSKHLPLFQKRPLSDTPISSNWNSPGITEENTPSDSPENSATNLKSLHRLHINDETQLKNAKIPTNDTTDYMPPSDGANEVTRIDLKDIKSPTRHHKRRPTTIDVPGLTKSKTSPDGLISKEDSGSKLVIVMVGLPATGKSFITNKLSRFLNYSLYYCKVFNVGNTRRKFAKEHGLKDQDSKFFEPKNADSTRLRDKWAMDTLDELLDYLLEGSGSVGIFDATNTSRERRKNVLARIRKRSPHLKVLFLESVCSDHALVQKNIRLKLFGPDYKGKDPESSLKDFKSRLANYLKAYEPIEDDENLQYIKMIDVGKKVIAYNIQGFLASQTVYYLLNFNLADRQIWITRSGESEDNVSGRIGGNSHLTPRGLRFAKSLPKFIARQREIFYQNLMQQKKNNENTDGNIYNDFFVWTSMRARTIGTAQYFNEDDYPIKQMKMLDELSAGDYDGMTYPEIKNNFPEEFEKRQKDKLRYRYPGIGGESYMDVINRLRPVITELERIEDNVLIITHRVVARALLGYFMNLSMGIIANLDVPLHCVYCLEPKPYGITWSLWEYDEASDSFSKVPQTDLNTTRVKEVGLVYNERRYSVIPTAPPSARSSFASDFLSRKRSNPTSASSSQSELSEQPKNSVSAQTGSNNTTLIGSNFNIKNENGDSRIPLSAPLMATNTSNNILDGGGTSISIHRPRVVPNQNNVNPLLANNNKAASNVPNVKKSAATPRQIFEIDKVDEKLSMLKNKSFLLHGKDYPNNADNNDNEDIRAKTMNRSQSHV",
"ec_number": "2.7.1.105",
"entrez_id": "854699",
"entry_name": "6P21_YEAST",
"gene_name": "PFK26",
"gene_name_alt": null,
"gene_name_oln": "YIL107C",
"gene_name_orf": null,
"ko_name": ["6-phosphofructo-2-kinase"],
"ko_number": "K00900",
"length": 827,
"mass": "93417",
"ncbi_taxonomy_id": 559292,
"protein_name": "6-phosphofructo-2-kinase 1 (6PF-2-K 1) (EC 2.7.1.105) (Phosphofructokinase 2 I)",
"species_name": "Saccharomyces cerevisiae S288C",
"status": "reviewed",
"uniprot_id": "P40433"
},
{
"abundances": [
{
"abundance": "30.0",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "108",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "3.09",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "154",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "1.2",
"organ": "WHOLE_ORGANISM"
}
],
"canonical_sequence": "MGGSSDSDSHDGYLTSEYNSSNSLFSLNTGNSYSSASLDRATLDCQDSVFFDNHKSSLLSTEVPRFISNDPLHLPITLNYKRDNADPTYTNGKVNKFMIVLIGLPATGKSTISSHLIQCLKNNPLTNSLRCKVFNAGKIRRQISCATISKPLLLSNTSSEDLFNPKNNDKKETYARITLQKLFHEINNDECDVGIFDATNSTIERRRFIFEEVCSFNTDELSSFNLVPIILQVSCFNRSFIKYNIHNKSFNEDYLDKPYELAIKDFAKRLKHYYSQFTPFSLDEFNQIHRYISQHEEIDTSLFFFNVINAGVVEPHSLNQSHYPSTCGKQIRDTIMVIENFINHYSQMFGFEYIEAVKLFFESFGNSSEETLTTLDSVVNDKFFDDLQSLIESNGFA",
"ec_number": "2.7.1.105",
"entrez_id": "853984",
"entry_name": "6P22_YEAST",
"gene_name": "PFK27",
"gene_name_alt": null,
"gene_name_oln": "YOL136C",
"gene_name_orf": null,
"ko_name": ["6-phosphofructo-2-kinase"],
"ko_number": "K00900",
"length": 397,
"mass": "45318",
"ncbi_taxonomy_id": 559292,
"protein_name": "6-phosphofructo-2-kinase 2 (6PF-2-K 2) (EC 2.7.1.105) (Phosphofructokinase 2 II)",
"species_name": "Saccharomyces cerevisiae S288C",
"status": "reviewed",
"uniprot_id": "Q12471"
},
{
"abundances": [
{
"abundance": "252",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "144",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "133",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "24.9",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "59.5",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "241",
"organ": "WHOLE_ORGANISM"
}
],
"canonical_sequence": "MSNNNNKDDSELQSRTHYYNPDRTAIPVKDDVDQLDKFGSPKLSANDHSFTNTDSVTSEDRPFSSPVSTLTSNSANFSDSSLQNSPVHPIPSPALSPTLNLGSRPDVKRVSSGGYFALPKQLTSIRQTHRPMSQQHRVPSFHPASDTAPPSPIPFHHHLRKKGSSMSIPGQTSIVSSNNGSEATNPPEEKLAIIMVGLPARGKSYIVNKLVRYYNWLQYNCKAFNVGNFRRKHASHSHDDASFFDPSNEEASKLRESFAMDTLDALLQWFEEEDGVVGIFDATNSTSKRRKAIVDHLSKVPYVTTLFIESICNDEQLIAANMRMKLVGPDYKDLNPEQSLRDFQERVRMYERKYEPLGKSEEDLNLRYIKVINVGKKVVAFNIRGFLAGQAVFFLLNFNLSPRQIWVTRHGESVDNVRGRIGGNAELTPLGRQFSEDLALFIDEKRDEFQERLYNDYSKESHLLQHGSHSFNGKQFETSFNCLTPSENTVNDPQVLDPEDEERLEKPYSVWTSMMQRSIQTAAYFDEEQYDIKAMRMLNEICSGICDGLTYEEIKSIYPKEYEARKLDKLNYRYPGSGGESYLDVIYRLQSVIVEIERMKHHVLVIGHRVITRIIIAYFLGCRREDIAYLNVPLHTVYCIEPQPYGTDFYQYNYDPNTRKFSRVPFSL",
"ec_number": "2.7.1.105",
"entrez_id": "3361378",
"entry_name": "YIKE_SCHPO",
"gene_name": null,
"gene_name_alt": null,
"gene_name_oln": null,
"gene_name_orf": "SPAPB17E12.14c",
"ko_name": ["6-phosphofructo-2-kinase"],
"ko_number": "K00900",
"length": 668,
"mass": "76393",
"ncbi_taxonomy_id": 284812,
"protein_name": "Probable 6-phosphofructo-2-kinase PB17E12.14c (EC 2.7.1.105)",
"species_name": "Schizosaccharomyces pombe 972h-",
"status": "reviewed",
"uniprot_id": "Q8TFH0"
},
{
"abundances": [
{
"abundance": "14.5",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "9.67",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "11.1",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "24.8",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "23.8",
"organ": "WHOLE_ORGANISM"
},
{
"abundance": "8.52",
"organ": "WHOLE_ORGANISM"
}
],
"canonical_sequence": "MSNTGSARTEEFTKGTGYEATKPNNDTDDDAKQNYPSKEPHMKLGDYTEETSFVDDSIFKREELTPDRNSPANDVEKMEVPKPTPQWMKLKDEGKLGKHRKNRLRRPGRFPVRQESTIDIPGLTVSKRTENDSNNASYGIREKLIIILVGIPATGKSYIGSKLSRYYNWLKYNCRFFSVGDKRREEGASTYSMSADFFDIKNEETFKFRENVALETLEDLLHWMIHENGVIGILDATNSTHERRKHLYDRISKEADIGIMFLESLCTDDILFEENIKLKIKGPDYEGYDTESALKDLRERVDLYKKYYEPLDERDEQLPFLQYVKVINVGIKVVTHNIEGFLAGQAVYFMLNLNIQKRQIWLTRPGESLDTVAGRIGGDASLTPIGKQYAQDLANFMDRQRVLWQLRYTNDLASTNKRFSLSEASSFNVWSSVRKRAIETIEFFNPDSYNVKKIRLLNDLNLGSREGLTLREFSEKYPDEFDVIKRKDYAYRFSGQGGESYLDVIHRLQPLIVEIERSSGNILVVSHRIVSNILMTYFLNYHPEDIIDVGLPLHTLFCIESDRYGTTCMAYRYDAANRQFIKDPMFDLRKRT",
"ec_number": "2.7.1.105",
"entrez_id": "2541948",
"entry_name": "YFMD_SCHPO",
"gene_name": null,
"gene_name_alt": null,
"gene_name_oln": null,
"gene_name_orf": "SPAC222.13c",
"ko_name": ["6-phosphofructo-2-kinase"],
"ko_number": "K00900",
"length": 592,
"mass": "68640",
"ncbi_taxonomy_id": 284812,
"protein_name": "Probable 6-phosphofructo-2-kinase C222.13c (EC 2.7.1.105)",
"species_name": "Schizosaccharomyces pombe 972h-",
"status": "reviewed",
"uniprot_id": "Q9UTE1"
}
]
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