new spec sheet

Dockerfile

@@ -22,15 +22,14 @@ RUN ls -l . \
 COPY . ./
 RUN pip install -e .
 
-ENV PORT=80
-
 # # Download public key for github.com
 # RUN mkdir -m 700 /root/.ssh; \
 #   touch -m 600 /root/.ssh/known_hosts; \
 #   ssh-keyscan github.com > /root/.ssh/known_hosts
 
 # # Clone private repository
 # RUN --mount=type=ssh,id=github git clone git@github.com:KarrLab/karr_lab_build_config.git /.wc
+ENV  PORT=${PORT}
 ENV  PRODUCTION=${PRODUCTION}
 ENV  MONGO_USERNAME=${MONGO_USERNAME}
 ENV  MONGO_PASSWORD=${MONGO_PASSWORD}

datanator_rest_api/spec/DatanatorAPI.yaml

@@ -991,41 +991,6 @@ paths:
       summary: Get related reactions based on protein's uniprot_id
       tags:
       - Proteins
-  /proteins/similar_protein/refseq/:
-    get:
-      description: This section provides links to proteins that are similar to the
-        protein sequence(s) described in this entry at different levels of sequence
-        identity thresholds (100%, 90% and 50%) based on their membership in UniProt
-        Reference Clusters.
-      parameters:
-      - in: query
-        name: uniprot_id
-        required: true
-        schema:
-          type: string
-      - in: query
-        name: identity
-        required: false
-        schema:
-          default: 90
-          enum:
-          - 100
-          - 90
-          - 50
-          type: integer
-      responses:
-        '200':
-          content:
-            application/json:
-              schema:
-                items:
-                  nullable: true
-                  type: string
-                type: array
-          description: OK
-      summary: Get similar proteins based on refseq
-      tags:
-      - Proteins
   /proteins/summary/num_abundances/:
     get:
       description: For about page