debugging for new environment

KarrLab · Aug 30, 2018 · 8ac1fc0 · 8ac1fc0
1 parent f4d47f9
commit 8ac1fc0
Showing 1 changed file with 11 additions and 4 deletions.
diff --git a/karr_lab_build_utils/core.py b/karr_lab_build_utils/core.py
@@ -2288,12 +2288,12 @@ def analyze_package(self, package_name, messages=None, config_filename=None, ver
 
         report_opts = [
             '--reports=n',
-            '--score=n',            
+            '--score=n',
         ]
         other_opts = []
         if config_filename:
             other_opts.append('--rcfile={}'.format(config_filename))
-        if verbose:            
+        if verbose:
             other_opts.append('--verbose')
         return epylint.lint(package_name, msg_opts + report_opts + other_opts)
 
@@ -2477,8 +2477,15 @@ def download_package_config_files(self):
         """
         # clone or update repo
         if os.path.isdir(self.configs_repo_path):
-            repo = git.Repo(path=self.configs_repo_path)
-            repo.remotes['origin'].pull()
+            try:
+                repo = git.Repo(path=self.configs_repo_path)
+                repo.remotes['origin'].pull()
+            except InvalidGitRepositoryError:
+                temp_dir_name = tempfile.mkdtemp()
+                git.Repo.clone_from(self.configs_repo_url, temp_dir_name)
+                shutil.copytree_to_existing_destination(self.configs_repo_url, temp_dir_name)
+                shutil.rmtree(self.configs_repo_url)
+                os.rename(temp_dir_name, self.configs_repo_url)
         else:
             try:
                 git.Repo.clone_from(self.configs_repo_url, self.configs_repo_path)