Fix how title is parsed in SciBite transform

Knowledge-Graph-Hub · Apr 15, 2020 · 3393985 · 3393985
1 parent b587032
commit 3393985
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/kg_covid_19/transform_utils/scibite_cord/scibite_cord.py b/kg_covid_19/transform_utils/scibite_cord/scibite_cord.py
@@ -97,9 +97,10 @@ def parse_annotation_doc(self, node_handle, edge_handle, doc: Dict, subset: str
         """
         terms = set()
         paper_id = doc['paper_id']
-
+        title = None
         if 'metadata' in doc:
             metadata = doc['metadata']
+            title = metadata['title'].replace('\n', ' ')
             # extract hits from metadata
             terms.update(self.extract_termite_hits(metadata))
 
@@ -125,7 +126,7 @@ def parse_annotation_doc(self, node_handle, edge_handle, doc: Dict, subset: str
             header=self.node_header,
             data=[
                 f"CORD:{paper_id}",
-                f"{metadata['title']}",
+                f"{title}",
                 "biolink:Publication",
                 ""
             ]