Merge 4ddc6fe into 2e2fb44

Knowledge-Graph-Hub · Apr 10, 2020 · b6783ba · b6783ba
2 parents 2e2fb44 + 4ddc6fe
commit b6783ba
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diff --git a/download.yaml b/download.yaml
@@ -73,14 +73,14 @@
 #
 # SciBite CORD-19 annotations v1.2
 #
--
-  url: https://s3.eu-west-2.amazonaws.com/scibite.covid19data/CORD19/annotated-cord19/CORD-19_1_3.zip
-  local_name: CORD-19_1_3.zip
-
-# SciBite CORD-19 entity co-occurrences v1.0
--
-  url: https://github.com/SciBiteLabs/CORD19/raw/master/sentence-co-occurrence-CORD-19/1.0/cv19_scc.zip
-  local_name: cv19_scc.zip
+#-
+#  url: https://s3.eu-west-2.amazonaws.com/scibite.covid19data/CORD19/annotated-cord19/CORD-19_1_3.zip
+#  local_name: CORD-19_1_3.zip
+#
+## SciBite CORD-19 entity co-occurrences v1.0
+#-
+#  url: https://github.com/SciBiteLabs/CORD19/raw/master/sentence-co-occurrence-CORD-19/1.0/cv19_scc.zip
+#  local_name: cv19_scc.zip
 
 #
 # PharmGKB - drug -> drug target info, and gene id mappings

diff --git a/kg_covid_19/transform.py b/kg_covid_19/transform.py
@@ -7,7 +7,7 @@
 from kg_covid_19.transform_utils.hpo.hpo import HpoTransform
 from kg_covid_19.transform_utils.\
     sars_cov_2_gene_annot.sars_cov_2_gene_annot import SARSCoV2GeneAnnot
-from kg_covid_19.transform_utils.scibite_cord import ScibiteCordTransform
+# from kg_covid_19.transform_utils.scibite_cord import ScibiteCordTransform
 from kg_covid_19.transform_utils.pharmgkb import PharmGKB
 from kg_covid_19.transform_utils.string_ppi import StringTransform
 from kg_covid_19.transform_utils.ttd.ttd import TTDTransform
@@ -20,7 +20,7 @@
     'HpoTransform': HpoTransform,
     'TTDTransform': TTDTransform,
     'StringTransform': StringTransform,
-    'ScibiteCordTransform': ScibiteCordTransform,
+#    'ScibiteCordTransform': ScibiteCordTransform,
     'PharmGKB': PharmGKB,
     'SARSCoV2GeneAnnot': SARSCoV2GeneAnnot
 }