Merge b57670a into 6ef6c06

README.rst

@@ -1,17 +1,21 @@
 kg_covid-19
 =========================================================================================
 |travis| |sonar_quality| |sonar_maintainability| |codacy|
-|code_climate_maintainability| |pip| |downloads|
+|code_climate_maintainability|
 
 KG hub to produce a knowledge graph for COVID-19 and SARS-COV-2
 
+See the `repository's wiki for more details <https://github.com/kg-emerging-viruses/kg-emerging-viruses/wiki>`_.
+
 How do I install this package?
 ----------------------------------------------
-As usual, just download it using pip:
+Download using git:
 
 .. code:: shell
 
-    pip install kg_emerging_viruses
+    git clone https://github.com/Knowledge-Graph-Hub/kg-covid-19
+    cd kg-covid-19
+    python setup.py install --user
 
 How do I use this package?
 ----------------------------------------------
@@ -22,7 +26,6 @@ How do I use this package?
     python run.py transform
     python run.py load
 
-See the `repository's wiki for more details <https://github.com/kg-emerging-viruses/kg-emerging-viruses/wiki>`_.
 
 Tests Coverage
 ----------------------------------------------

run.py

@@ -60,8 +60,9 @@ def transform(*args, **kwargs) -> None:
 
     return None
 
+
 @cli.command()
-@click.argument('yaml', type=click.Path(exists=True))
+@click.option('yaml', '-y', default="merge.yaml", type=click.Path(exists=True))
 def load(yaml: str) -> None:
     """Use KGX to load subgraphs to create a merged graph.