Merge pull request #174 from KrishnaswamyLab/dev

MAGIC v2.0.1
KrishnaswamyLab · Nov 12, 2019 · 2b6a68a · 2b6a68a
2 parents 55c9d89 + 9a2729f
commit 2b6a68a
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/Rmagic/README.Rmd b/Rmagic/README.Rmd
@@ -225,7 +225,7 @@ to your `~/.Renviron`:
 `PATH=/path/to/my/python`
 
 You can read more about `Renviron` at
-<https://cran.r-project.org/web/packages/startup/vignettes/startup-intro.html>.
+<https://cran.r-project.org/package=startup/vignettes/startup-intro.html>.
 
 ### Help
 

diff --git a/Rmagic/README.md b/Rmagic/README.md
@@ -292,7 +292,7 @@ to your `~/.Renviron`:
 `PATH=/path/to/my/python`
 
 You can read more about `Renviron` at
-<https://cran.r-project.org/web/packages/startup/vignettes/startup-intro.html>.
+<https://cran.r-project.org/package=startup/vignettes/startup-intro.html>.
 
 ### Help
 

diff --git a/python/magic/magic.py b/python/magic/magic.py
@@ -50,7 +50,7 @@ class MAGIC(BaseEstimator):
         maximum number of nearest neighbors with nonzero connection.
         If `None`, will be set to 3 * `knn`
 
-    decay : int, optional, default: 2
+    decay : int, optional, default: 15
         sets decay rate of kernel tails.
         If None, alpha decaying kernel is not used
 
@@ -146,7 +146,7 @@ def __init__(
         self,
         knn=10,
         knn_max=None,
-        decay=2,
+        decay=15,
         t="auto",
         n_pca=100,
         solver="exact",