fix duplicates message

KrishnaswamyLab · Feb 21, 2019 · f31ffc4 · f31ffc4
1 parent 34243be
commit f31ffc4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/graphtools/graphs.py b/graphtools/graphs.py
@@ -245,7 +245,7 @@ def _check_duplicates(self, distances, indices):
                     "Detected zero distance between {} pairs of samples. "
                     "Consider removing duplicates to avoid errors in "
                     "downstream processing.".format(
-                        np.sum(np.sum(distances[:, 1:]))),
+                        np.sum(np.sum(distances[:, 1:] == 0))),
                     RuntimeWarning)
 
     def build_kernel_to_data(self, Y, knn=None, bandwidth=None,