Merge pull request #40 from KrishnaswamyLab/dev

scprep v0.12.0
KrishnaswamyLab · Apr 14, 2019 · b70b7d6 · b70b7d6
2 parents 95277c6 + 4417ae6
commit b70b7d6
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diff --git a/.travis.yml b/.travis.yml
@@ -14,14 +14,28 @@
         - libhdf5-dev
         - ffmpeg
         - pandoc
+        - gfortran
+        - libblas-dev
+        - liblapack-dev
 
   cache: 
     - pip
     - apt
+    - directories:
+      - $HOME/R/Library
 
   install:
     - python setup.py install
 
+  before_script:
+    - sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
+    - echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial-cran35/" | sudo tee -a /etc/apt/sources.list
+    - sudo apt-get update -qq
+    - sudo apt-get install r-base-core -y
+    - export R_LIBS_USER="$HOME/R/Library"
+    - echo ".libPaths(c('$R_LIBS_USER', .libPaths()))" >> $HOME/.Rprofile
+    - Rscript travis_setup.R
+
   script:
     - pip install -U .[test]
     - python setup.py test

diff --git a/data/test_data/test_10X/matrix.mtx.gz b/data/test_data/test_10X/matrix.mtx.gz
diff --git a/data/test_data/test_10X_cellranger3.h5 b/data/test_data/test_10X_cellranger3.h5
diff --git a/...st_data/test_10X_generanger3/barcodes.tsv → ...st_data/test_10X_cellranger3/barcodes.tsv b/...st_data/test_10X_generanger3/barcodes.tsv → ...st_data/test_10X_cellranger3/barcodes.tsv
diff --git a/.../test_data/test_10X_generanger3/genes.tsv → ...st_data/test_10X_cellranger3/features.tsv b/.../test_data/test_10X_generanger3/genes.tsv → ...st_data/test_10X_cellranger3/features.tsv
diff --git a/data/test_data/test_10X/matrix.mtx → ...test_data/test_10X_cellranger3/matrix.mtx b/data/test_data/test_10X/matrix.mtx → ...test_data/test_10X_cellranger3/matrix.mtx