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scprep v1.1.0 #120

Merged
merged 52 commits into from
Mar 19, 2021
Merged

scprep v1.1.0 #120

merged 52 commits into from
Mar 19, 2021

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scottgigante
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Changeset:

  • Added scprep.run.DyngenSimulate
  • Improved behavior of DREVI with constant inputs
  • Added pre-commit for clearer development guidelines

scottgigante and others added 30 commits February 10, 2021 17:11
@scottgigante
bump version
012de21
@scottgigante
test py3.5, r oldrel & devel
d7ed9d9
@scottgigante
remove author tags
0be126f
@scottgigante
document with_HDF5
edf3567
@scottgigante
docs
95a3312
@scottgigante
bioc is broken on oldrel
59ce44e
@scottgigante
less noisy conversion
f015707
@scottgigante
Merge branch 'dev' into feature/pre-commit
c4b266d
@scottgigante
docs
986cdd6
@scottgigante
don't test on devel
c7d0dcd
@scottgigante
add pre-commit
c7d6c3b
@scottgigante
set black to py35
8a7638e
@github-actions
pre-commit
368552f
@scottgigante
fix flake8 args
a5655e8
@github-actions
pre-commit
8b50abc
@scottgigante
use flake8 everywhere
8012d2b
@scottgigante
flake8
4f6e6ee
@scottgigante
Merge branch 'feature/pre-commit' of github.com:KrishnaswamyLab/scpre…
df78be8 
…p into feature/pre-commit
@github-actions
pre-commit
3c74ac3
@scottgigante
import sys
3625158
@scottgigante
Merge branch 'feature/pre-commit' of github.com:KrishnaswamyLab/scpre…
1157fc3 
…p into feature/pre-commit
@scottgigante
fix setup.cfg
1941290
@github-actions
pre-commit
70c0d95
@scottgigante
document
0d90d02
@scottgigante
Merge branch 'feature/pre-commit' of github.com:KrishnaswamyLab/scpre…
b201293 
…p into feature/pre-commit
@scottgigante
install hdf5
50892e4
@scottgigante
drop python 3.5 support
49771ea
@scottgigante
fix typo
9a57d47
@scottgigante
fix reference to license
cbf167d
@scottgigante
remove travis
528ec7d
scottgigante and others added 22 commits February 18, 2021 13:58
@scottgigante
update contributing to reflect pre-commit
dc1b4be
@scottgigante
add openstack and pre-commit badges
45cee78
@scottgigante
update requirements
15b4309
@scottgigante
remove autoblack
b0566ce
@aarthivenkat
Generalized install_github, formatting fixes
fed32fb
@aarthivenkat
Handling fewer cells than specified with force_num_cells flag
76d0d15
@aarthivenkat
Import fixes
6051b2b
@scottgigante
Merge branch 'dev' into feature/dyngen
f706e87
@github-actions
pre-commit
8822fe7
@scottgigante
Install dyngen deps from renv for caching
168cff9
@scottgigante
change default empty drevi behaviour to np.zeros
602c836
@aarthivenkat
force_num_cells fix, additional tests, formatting
8348f11
@github-actions
pre-commit
83cd195
@scottgigante
Merge pull request #119 from aarthivenkat/feature/dyngen
f2daf71 
Feature/dyngen
@scottgigante
bump version
e9413e0
@scottgigante
more verbose
2d4a156
@scottgigante
force num_cells recursively
ca3a63e
@scottgigante
fix typo
b56f653
@aarthivenkat
Merge pull request #1 from KrishnaswamyLab/dev
74d1ded 
Merging dev edits
@aarthivenkat
Update dyngen installation, github installation tests
3caf8b5
@github-actions
pre-commit
442a201
@scottgigante
Merge pull request #121 from aarthivenkat/dev
0b96fd2 
Bugfix: Dyngen installation and Github installation tests
@coveralls
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coveralls commented Mar 19, 2021 •
edited
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Coverage Status

Coverage increased (+0.1%) to 97.968% when pulling 0b96fd2 on dev into 1a4f5e2 on master.

@scottgigante scottgigante merged commit 895b6c5 into master Mar 19, 2021
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@scottgigante @coveralls @aarthivenkat