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metadata.json
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metadata.json
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{
"schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
"version": "0.2.3",
"changelog": {
"0.2.3": "fix PYTHONPATH in readme.md",
"0.2.2": "add name tag",
"0.2.1": "fix license Copyright error",
"0.2.0": "update license files",
"0.1.2": "Add training support for whole brain segmentation, users can use active learning in the MONAI Label",
"0.1.1": "Fix dimension according to MONAI 1.0 and fix readme file",
"0.1.0": "complete the model package"
},
"monai_version": "1.0.0",
"pytorch_version": "1.10.0",
"numpy_version": "1.21.2",
"optional_packages_version": {
"nibabel": "3.2.1",
"pytorch-ignite": "0.4.8",
"einops": "0.4.1",
"fire": "0.4.0",
"timm": "0.6.7",
"torchvision": "0.11.1"
},
"name": "Whole brain large UNEST segmentation",
"task": "Whole Brain Segmentation",
"description": "A 3D transformer-based model for whole brain segmentation from T1W MRI image",
"authors": "Vanderbilt University + MONAI team",
"copyright": "Copyright (c) MONAI Consortium",
"data_source": "",
"data_type": "nibabel",
"image_classes": "single channel data, intensity scaled to [0, 1]",
"label_classes": "133 Classes",
"pred_classes": "133 Classes",
"eval_metrics": {
"mean_dice": 0.71
},
"intended_use": "This is an example, not to be used for diagnostic purposes",
"references": [
"Xin, et al. Characterizing Renal Structures with 3D Block Aggregate Transformers. arXiv preprint arXiv:2203.02430 (2022). https://arxiv.org/pdf/2203.02430.pdf"
],
"network_data_format": {
"inputs": {
"image": {
"type": "image",
"format": "hounsfield",
"modality": "MRI",
"num_channels": 1,
"spatial_shape": [
96,
96,
96
],
"dtype": "float32",
"value_range": [
0,
1
],
"is_patch_data": true,
"channel_def": {
"0": "image"
}
}
},
"outputs": {
"pred": {
"type": "image",
"format": "segmentation",
"num_channels": 133,
"spatial_shape": [
96,
96,
96
],
"dtype": "float32",
"value_range": [
0,
1
],
"is_patch_data": true,
"channel_def": {
"0": "background",
"1": "3rd-Ventricle",
"2": "4th-Ventricle",
"3": "Right-Accumbens-Area",
"4": "Left-Accumbens-Area",
"5": "Right-Amygdala",
"6": "Left-Amygdala",
"7": "Brain-Stem",
"8": "Right-Caudate",
"9": "Left-Caudate",
"10": "Right-Cerebellum-Exterior",
"11": "Left-Cerebellum-Exterior",
"12": "Right-Cerebellum-White-Matter",
"13": "Left-Cerebellum-White-Matter",
"14": "Right-Cerebral-White-Matter",
"15": "Left-Cerebral-White-Matter",
"16": "Right-Hippocampus",
"17": "Left-Hippocampus",
"18": "Right-Inf-Lat-Vent",
"19": "Left-Inf-Lat-Vent",
"20": "Right-Lateral-Ventricle",
"21": "Left-Lateral-Ventricle",
"22": "Right-Pallidum",
"23": "Left-Pallidum",
"24": "Right-Putamen",
"25": "Left-Putamen",
"26": "Right-Thalamus-Proper",
"27": "Left-Thalamus-Proper",
"28": "Right-Ventral-DC",
"29": "Left-Ventral-DC",
"30": "Cerebellar-Vermal-Lobules-I-V",
"31": "Cerebellar-Vermal-Lobules-VI-VII",
"32": "Cerebellar-Vermal-Lobules-VIII-X",
"33": "Left-Basal-Forebrain",
"34": "Right-Basal-Forebrain",
"35": "Right-ACgG--anterior-cingulate-gyrus",
"36": "Left-ACgG--anterior-cingulate-gyrus",
"37": "Right-AIns--anterior-insula",
"38": "Left-AIns--anterior-insula",
"39": "Right-AOrG--anterior-orbital-gyrus",
"40": "Left-AOrG--anterior-orbital-gyrus",
"41": "Right-AnG---angular-gyrus",
"42": "Left-AnG---angular-gyrus",
"43": "Right-Calc--calcarine-cortex",
"44": "Left-Calc--calcarine-cortex",
"45": "Right-CO----central-operculum",
"46": "Left-CO----central-operculum",
"47": "Right-Cun---cuneus",
"48": "Left-Cun---cuneus",
"49": "Right-Ent---entorhinal-area",
"50": "Left-Ent---entorhinal-area",
"51": "Right-FO----frontal-operculum",
"52": "Left-FO----frontal-operculum",
"53": "Right-FRP---frontal-pole",
"54": "Left-FRP---frontal-pole",
"55": "Right-FuG---fusiform-gyrus ",
"56": "Left-FuG---fusiform-gyrus",
"57": "Right-GRe---gyrus-rectus",
"58": "Left-GRe---gyrus-rectus",
"59": "Right-IOG---inferior-occipital-gyrus",
"60": "Left-IOG---inferior-occipital-gyrus",
"61": "Right-ITG---inferior-temporal-gyrus",
"62": "Left-ITG---inferior-temporal-gyrus",
"63": "Right-LiG---lingual-gyrus",
"64": "Left-LiG---lingual-gyrus",
"65": "Right-LOrG--lateral-orbital-gyrus",
"66": "Left-LOrG--lateral-orbital-gyrus",
"67": "Right-MCgG--middle-cingulate-gyrus",
"68": "Left-MCgG--middle-cingulate-gyrus",
"69": "Right-MFC---medial-frontal-cortex",
"70": "Left-MFC---medial-frontal-cortex",
"71": "Right-MFG---middle-frontal-gyrus",
"72": "Left-MFG---middle-frontal-gyrus",
"73": "Right-MOG---middle-occipital-gyrus",
"74": "Left-MOG---middle-occipital-gyrus",
"75": "Right-MOrG--medial-orbital-gyrus",
"76": "Left-MOrG--medial-orbital-gyrus",
"77": "Right-MPoG--postcentral-gyrus",
"78": "Left-MPoG--postcentral-gyrus",
"79": "Right-MPrG--precentral-gyrus",
"80": "Left-MPrG--precentral-gyrus",
"81": "Right-MSFG--superior-frontal-gyrus",
"82": "Left-MSFG--superior-frontal-gyrus",
"83": "Right-MTG---middle-temporal-gyrus",
"84": "Left-MTG---middle-temporal-gyrus",
"85": "Right-OCP---occipital-pole",
"86": "Left-OCP---occipital-pole",
"87": "Right-OFuG--occipital-fusiform-gyrus",
"88": "Left-OFuG--occipital-fusiform-gyrus",
"89": "Right-OpIFG-opercular-part-of-the-IFG",
"90": "Left-OpIFG-opercular-part-of-the-IFG",
"91": "Right-OrIFG-orbital-part-of-the-IFG",
"92": "Left-OrIFG-orbital-part-of-the-IFG",
"93": "Right-PCgG--posterior-cingulate-gyrus",
"94": "Left-PCgG--posterior-cingulate-gyrus",
"95": "Right-PCu---precuneus",
"96": "Left-PCu---precuneus",
"97": "Right-PHG---parahippocampal-gyrus",
"98": "Left-PHG---parahippocampal-gyrus",
"99": "Right-PIns--posterior-insula",
"100": "Left-PIns--posterior-insula",
"101": "Right-PO----parietal-operculum",
"102": "Left-PO----parietal-operculum",
"103": "Right-PoG---postcentral-gyrus",
"104": "Left-PoG---postcentral-gyrus",
"105": "Right-POrG--posterior-orbital-gyrus",
"106": "Left-POrG--posterior-orbital-gyrus",
"107": "Right-PP----planum-polare",
"108": "Left-PP----planum-polare",
"109": "Right-PrG---precentral-gyrus",
"110": "Left-PrG---precentral-gyrus",
"111": "Right-PT----planum-temporale",
"112": "Left-PT----planum-temporale",
"113": "Right-SCA---subcallosal-area",
"114": "Left-SCA---subcallosal-area",
"115": "Right-SFG---superior-frontal-gyrus",
"116": "Left-SFG---superior-frontal-gyrus",
"117": "Right-SMC---supplementary-motor-cortex",
"118": "Left-SMC---supplementary-motor-cortex",
"119": "Right-SMG---supramarginal-gyrus",
"120": "Left-SMG---supramarginal-gyrus",
"121": "Right-SOG---superior-occipital-gyrus",
"122": "Left-SOG---superior-occipital-gyrus",
"123": "Right-SPL---superior-parietal-lobule",
"124": "Left-SPL---superior-parietal-lobule",
"125": "Right-STG---superior-temporal-gyrus",
"126": "Left-STG---superior-temporal-gyrus",
"127": "Right-TMP---temporal-pole",
"128": "Left-TMP---temporal-pole",
"129": "Right-TrIFG-triangular-part-of-the-IFG",
"130": "Left-TrIFG-triangular-part-of-the-IFG",
"131": "Right-TTG---transverse-temporal-gyrus",
"132": "Left-TTG---transverse-temporal-gyrus"
}
}
}
}
}