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Use full gene set in Samui apps #84

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Nick-Eagles opened this issue Aug 23, 2023 · 2 comments
Open

Use full gene set in Samui apps #84

Nick-Eagles opened this issue Aug 23, 2023 · 2 comments

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@Nick-Eagles
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Originally, due to a misunderstanding about Samui's capabilities and using its API, I subsetted gene expression data, which resulted in dropping some biologically interesting genes. The apps should be rebuilt and redeployed on AWS with the full gene set, using add_chunked_feature instead of add_csv_feature here.
@lcolladotor
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Is this still an active issue?

@Nick-Eagles
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Nick-Eagles commented Nov 20, 2023 •
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Yes, I haven't addressed it and just confirmed with Sang Ho that he's still interested in this being done.

Nick-Eagles added a commit that referenced this issue Nov 21, 2023
@Nick-Eagles
Use the full gene set. Also use the normal categorical display of pat…
7fa89d8 
…hology groups since a Samui bug was fixed. Most of #84
Nick-Eagles added a commit that referenced this issue Nov 22, 2023
@Nick-Eagles
Run Samui with the full gene set on all samples. Most of the remainde…
41d0ed9 
…r of #84 (just need to redeploy on AWS)
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@lcolladotor @Nick-Eagles