Switch from tensorboard to tensorboardx in logger #15728

lantiga · 2022-11-18T16:46:58Z

What does this PR do?

The tensorboard package used by the TensorBoard logger depends on grpcio, which is creating issues on some systems (no binary builds for M1/M2 macOS on Python > 3.9) or with other packages depending on a different grpcio version (i.e. label-studio).

This PR makes the TensorBoard logger depend on https://github.com/lanpa/tensorboardX instead, which produces equivalent TensorBoard files without extra dependencies apart from numpy and protobuf.

Does your PR introduce any breaking changes? If yes, please list them.

None

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cc @Borda @awaelchli

src/pytorch_lightning/loggers/tensorboard.py

carmocca

Happy to make these suggested changes for you if you prefer! Waiting on your greenlight

src/pytorch_lightning/loggers/tensorboard.py

requirements/pytorch/test.txt

lantiga · 2022-11-18T19:10:34Z

Happy to make these suggested changes for you if you prefer! Waiting on your greenlight

thanks @carmocca, doing now

src/pytorch_lightning/loggers/tensorboard.py

justusschock

lgtm in general, it would just be nice to have tests without having full tensorboard installed (which us not tested now since we always install all testing dependencies)

Borda · 2022-11-19T09:28:05Z

lgtm in general, it would just be nice to have tests without having full tensorboard installed (which us not tested now since we always install all testing dependencies)

All doctests are called without installing all dependencies

justusschock · 2022-11-19T09:54:29Z

that's true but doctests for loggers are meaningless as they only test imports here.

Borda · 2022-11-19T10:31:37Z

that's true but doctests for loggers are meaningless as they only test imports here.

So let's add one or we may have elsewhere simple train fit in docstring which would be using default logger...

for more information, see https://pre-commit.ci

Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com>

Borda · 2022-11-21T17:39:31Z

They are just meant to decrease the overhead of import pytorch_lightning (see #12786) while still fixing type annotations and tests.

well, you shortened PL import time but then you do an import of TB/TBX is called in the method experiment and log_hyperparams

Also note that my changes were passing on CI

no one is complaining about CI :)

…torch-lightning into tensorboardx

github-actions · 2022-11-21T18:07:52Z

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* Switch from tensorboard to tensorboardx in logger * Warn if log_graph is set to True but tensorboard is not installed * Fix warning message formatting * Apply suggestions from code review * simplify for TBX as required pkg * docs example * chlog * tbx 2.2 Co-authored-by: Luca Antiga <luca@lightning.ai> Co-authored-by: William Falcon <waf2107@columbia.edu> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com> Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com> Co-authored-by: Jirka <jirka.borovec@seznam.cz> (cherry picked from commit 9c2eb52)

@lantiga

* chlog update * Fix typo in script name (#15724) (cherry picked from commit d925077) * Torch inference mode for prediction (#15719) torch inference mode for prediction (cherry picked from commit 08d14ec) * [App] Update multi-node examples (#15700) Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com> Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com> (cherry picked from commit 8306797) * feature(docs/app/lit_tabs): add works (#15731) (cherry picked from commit 1a31d13) * [App] Fix VSCode IDE debugger (#15747) (cherry picked from commit 6714ca7) * Update tensorboard requirement from <2.11.0,>=2.9.1 to >=2.9.1,<2.12.0 in /requirements (#15746) Update tensorboard requirement in /requirements Updates the requirements on [tensorboard](https://github.com/tensorflow/tensorboard) to permit the latest version. - [Release notes](https://github.com/tensorflow/tensorboard/releases) - [Changelog](https://github.com/tensorflow/tensorboard/blob/master/RELEASE.md) - [Commits](tensorflow/tensorboard@2.9.1...2.11.0) --- updated-dependencies: - dependency-name: tensorboard dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> (cherry picked from commit 0b58b69) * Update beautifulsoup4 requirement from <=4.8.2 to <4.11.2 in /requirements (#15745) * Update beautifulsoup4 requirement in /requirements Updates the requirements on [beautifulsoup4](https://www.crummy.com/software/BeautifulSoup/bs4/) to permit the latest version. --- updated-dependencies: - dependency-name: beautifulsoup4 dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Apply suggestions from code review Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com> (cherry picked from commit 1ffbe1b) * [App] Fix multi-node pytorch example CI (#15753) (cherry picked from commit bc797fd) * [App] Improve `LightningTrainerScript` start-up time (#15751) (cherry picked from commit c2c1974) * Enable Probot CheckGroup v5 (#15670) (cherry picked from commit 6c8ee01) * [App] Enable properties for the Lightning flow (#15750) (cherry picked from commit 5cfb176) * test for Enable setting property (#15755) Co-authored-by: thomas chaton <thomas@grid.ai> Co-authored-by: Ethan Harris <ethanwharris@gmail.com> (cherry picked from commit ba14038) * Move s3fs to cloud extras (#15729) Co-authored-by: Luca Antiga <luca@lightning.ai> (cherry picked from commit dd75906) * Revert new Hydra launch behavior (#15737) * revert new hydra cwd behavior * remove debug statements * changelog Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Jirka <jirka.borovec@seznam.cz> Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com> (cherry picked from commit 88b2e5a) * FCCV Docs (#15598) * add custom data iter docs * add custom data iter docs * Update docs/source-pytorch/data/custom_data_iterables.rst * remove ToDevice * nit * Update docs/source-pytorch/data/custom_data_iterables.rst Co-authored-by: Luca Antiga <luca.antiga@gmail.com> * clarification for @lantiga * typo * Update docs/source-pytorch/data/custom_data_iterables.rst * Update docs/source-pytorch/data/custom_data_iterables.rst * Update docs/source-pytorch/data/custom_data_iterables.rst Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com> Co-authored-by: Akihiro Nitta <nitta@akihironitta.com> Co-authored-by: Luca Antiga <luca.antiga@gmail.com> (cherry picked from commit 006fde9) * Switch from tensorboard to tensorboardx in logger (#15728) * Switch from tensorboard to tensorboardx in logger * Warn if log_graph is set to True but tensorboard is not installed * Fix warning message formatting * Apply suggestions from code review * simplify for TBX as required pkg * docs example * chlog * tbx 2.2 Co-authored-by: Luca Antiga <luca@lightning.ai> Co-authored-by: William Falcon <waf2107@columbia.edu> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com> Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com> Co-authored-by: Jirka <jirka.borovec@seznam.cz> (cherry picked from commit 9c2eb52) * resolve conflicts * Fix azure path excludes (#15756) Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com> (cherry picked from commit aef94ce) * Disable XSRF protection in StreamlitFrontend to support upload in localhost (#15684) * Enable CORS in StreamlitFrontend to support upload * Only disable XSRF when running on localhost * Update test * Use utility fn to detect if localhost Co-authored-by: Luca Antiga <luca@lightning.ai> (cherry picked from commit ed3eef0) * Enable Probot CheckGroup v5.1 (#15763) (cherry picked from commit c55f80f) * Bump pytest from 7.1.3 to 7.2.0 in /requirements (#15677) Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.1.3 to 7.2.0. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest@7.1.3...7.2.0) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> (cherry picked from commit cfb27bd) * Fix the `examples/app_dag` App (#14359) * Fix app dag example * Add test * Update doc * Update tests/tests_app_examples/test_app_dag.py Co-authored-by: Sherin Thomas <sherin@grid.ai> (cherry picked from commit 2b61c92) * mergify: drop ready for draft (#15766) (cherry picked from commit 1a07a9c) * lightning delete cluster CLI command help text update (#15760) * updated the lighting delete cluster CLI command help text output * updated changelog * typo fix * Apply suggestions from code review Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com> (cherry picked from commit 75b0573) * Deduplicate top level lighting CLI command groups (#15761) * unify remove and delete command groups & the add and delete command groups * added changelog * fix tests * Apply suggestions from code review Co-authored-by: Jirka Borovec <6035284+Borda@users.noreply.github.com> (cherry picked from commit 7b2788e) * releasing 1.8.3 * CI: lite on GPU * Fix App Docs for lightning ssh-keys command (#15773) fixed ssh-keys docs (cherry picked from commit 317591d) Co-authored-by: thomas chaton <thomas@grid.ai> Co-authored-by: yiftachbeer <yiftach.beer@gmail.com> Co-authored-by: Sherin Thomas <sherin@lightning.ai> Co-authored-by: Ethan Harris <ethanwharris@gmail.com> Co-authored-by: Yurij Mikhalevich <yurij@grid.ai> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com> Co-authored-by: Luca Antiga <luca.antiga@gmail.com> Co-authored-by: Adrian Wälchli <aedu.waelchli@gmail.com> Co-authored-by: Justus Schock <12886177+justusschock@users.noreply.github.com> Co-authored-by: Kaushik B <45285388+kaushikb11@users.noreply.github.com> Co-authored-by: Rick Izzo <rlizzo@users.noreply.github.com>

leoleoasd · 2023-01-10T10:25:04Z

This PR breaks remote file system support as it seems that tensorboardX doesn't support fsspec.

carmocca · 2023-01-10T13:09:58Z

@leoleoasd If you install the 1.9 release candidate (or master), you can pip install tensorboard and then the logger will choose it over tensorboardX. Support for that was added in #15762 but it was not cherry-picked into a 1.8.x release.

leoleoasd · 2023-01-10T13:16:28Z

Ok, thanks @carmocca!
However:

should we clearly document this in the remote filesystem section of the document?
it was said that this is currently a temporary solution (loggers: revert useless exception #15789 (comment)). Will we still have fsspec support for the "permanent" version?

carmocca · 2023-01-10T13:42:01Z

Yes, this would be a useful note. Would you like to open a PR with the docs change?
Remote support is important for us, so we will look to support fsspec as much as we can.

lantiga requested review from williamFalcon, awaelchli, carmocca, justusschock, Borda and tchaton as code owners November 18, 2022 16:46

lantiga added this to the v1.8.x milestone Nov 18, 2022

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lantiga and others added 7 commits November 20, 2022 17:48

Switch from tensorboard to tensorboardx in logger

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Warn if log_graph is set to True but tensorboard is not installed

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Update tensorboard.py

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Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com>

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Merge branch 'tensorboardx' of https://github.com/PyTorchLightning/py…

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Borda mentioned this pull request Nov 23, 2022

Lazy import tensorboard #15762

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madtoinou mentioned this pull request Nov 25, 2022

PyLightning now depends on tensorboardx (previously tensorboard) unit8co/darts#1386

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Make tensorboard into an pip extra #9900

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nrudakov mentioned this pull request Dec 28, 2022

[tune] Tensorboard ray-project/ray#31103

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Document how to use TensorBoardLogger with fsspec #16320

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Deps: make omegaconf/tensorboard optional microsoft/torchgeo#1214

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Switch from tensorboard to tensorboardx in logger #15728

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