Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Timestamps not present in basecalled fastqs #22

Open
lborcard opened this issue Jul 5, 2024 · 1 comment
Open

Timestamps not present in basecalled fastqs #22

lborcard opened this issue Jul 5, 2024 · 1 comment

Comments

@lborcard
Copy link

lborcard commented Jul 5, 2024

Hi,

I am analysing data generated using a combination readfish and icarust now and I noticed that I could not find the timestamp that is normally present in fastqs (in the header start_time=) generated with Minknow.
And more generally, how is the timing of the experiment distributed ? In normal conditions and with readfish running. I am now using the timestamps of readfish as a proxy but I am not sure it's consistent with a real run.

best,

Loïc

@lborcard
Copy link
Author

lborcard commented Jul 8, 2024

this issue is related to this previous issue #20 and an attempt for generalize the question of timing in the Icarust software. Sorry if it feels like a duplicate.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant