Further additions to the maftools and ngs notebooks

Added patched maftools

lollipoPlot needed some love.

Added bcftools-notebook

Added bcftools notebook

To do bcftools things. Latest version

Variant annotation containers

Small changes to the variant annotation containers.

Utility notebooks

Added new tools to the list of notebooks. Same codebase as PBV7

Upgrade to R 3.6.2

Upgraded to most recent version of upstream using R 3.6.2.

Added docker containers for the GDC TCGA DNA-Seq processing pipeline.

Added Rsubread

Just a minor update. Added Rsubread and dependencies, making the container even more fat.

Upgrade to R 3.5.1

Upgraded the jupyter-notebook from upstream. Fixed a few build issues, which are due to the upgraded upstream. Should work (tm).

goseq package added

Added goseq and dependent packages to the deseq2_biocparallel notebook.

Last tag prior to upgrade to upstream version of R.

deseq2-biocparallel-notebook

Added an overlay notebook for DESeq2 and the biocparallel library to speed things up a bit.

Second release

datascience-notebook including working TCGAbiolinks.