Analysis of single-cell RNA-seq data

This code is used to build the "Analysis of single-cell RNA-seq data" course website.

The course website is built using bookdown.

Name		Name	Last commit message	Last commit date
Latest commit History 303 Commits
blischak		blischak
clustering		clustering
deng		deng
figures		figures
snn-cliq		snn-cliq
usoskin		usoskin
.gitignore		.gitignore
.travis.yml		.travis.yml
01-reqs.Rmd		01-reqs.Rmd
02-intro.Rmd		02-intro.Rmd
03-exprs-constr.Rmd		03-exprs-constr.Rmd
04-umis.Rmd		04-umis.Rmd
05-scater.Rmd		05-scater.Rmd
06-exprs-qc.Rmd		06-exprs-qc.Rmd
07-exprs-qc-reads.Rmd		07-exprs-qc-reads.Rmd
08-exprs-overview.Rmd		08-exprs-overview.Rmd
09-exprs-overview-reads.Rmd		09-exprs-overview-reads.Rmd
10-confounders.Rmd		10-confounders.Rmd
11-confounders-reads.Rmd		11-confounders-reads.Rmd
12-exprs-norm.Rmd		12-exprs-norm.Rmd
13-exprs-norm-reads.Rmd		13-exprs-norm-reads.Rmd
14-remove-conf.Rmd		14-remove-conf.Rmd
15-remove-conf-reads.Rmd		15-remove-conf-reads.Rmd
16-clust-intro.Rmd		16-clust-intro.Rmd
17-clustering.Rmd		17-clustering.Rmd
18-dropouts.Rmd		18-dropouts.Rmd
19-pseudotime.Rmd		19-pseudotime.Rmd
20-de-intro.Rmd		20-de-intro.Rmd
21-de-synth.Rmd		21-de-synth.Rmd
22-de-real.Rmd		22-de-real.Rmd
23-ideal-scrnaseq-pipeline.Rmd		23-ideal-scrnaseq-pipeline.Rmd
24-advanced.Rmd		24-advanced.Rmd
25-tools.Rmd		25-tools.Rmd
26-references.Rmd		26-references.Rmd
DESCRIPTION		DESCRIPTION
LICENSE		LICENSE
README.md		README.md
_bookdown.yml		_bookdown.yml
_build.sh		_build.sh
_deploy.sh		_deploy.sh
_output.yml		_output.yml
book.bib		book.bib
google_analytics.html		google_analytics.html
index.Rmd		index.Rmd
preamble.tex		preamble.tex
scRNA.seq.course.book.Rproj		scRNA.seq.course.book.Rproj
style.css		style.css
toc.css		toc.css

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