Merge pull request #1593 from sguizard/fix_ccs

Fix `ccs`

CHANGELOG.md

@@ -30,6 +30,7 @@
   - Handle change in output format in v3.9.3 with new `Quality_Metrics.csv` file ([#1563](https://github.com/ewels/MultiQC/issues/1563))
 - **CCS**
   - Tolerate compound IDs generated by pbcromwell ccs in the general statistics ([#1486](https://github.com/ewels/MultiQC/pull/1486))
+  - Fix report parsing. Update test on attributes ids ([#1583](https://github.com/ewels/MultiQC/issues/1583))
 - **Custom content**
   - Fixed module failing when writing data to file if there is a `/` in the section name ([#1515](https://github.com/ewels/MultiQC/issues/1515))
 - **DRAGEN**

multiqc/modules/ccs/ccs.py

@@ -154,7 +154,12 @@ def filter_and_pass(self, data):
 
         # Add filtere reasons (id starts with filtered_) and total passed
         for entry in attributes:
-            if entry["id"].startswith("filtered") or entry["id"] == "zmw_passed_yield":
+            if (
+                entry["id"].startswith("filtered")
+                or entry["id"] == "zmw_passed_yield"
+                or entry["id"].startswith("ccs_processing.filtered")
+                or entry["id"] == "ccs_processing.zmw_passed_yield"
+            ):
                 reasons[entry["name"]] = entry["value"]
 
         return reasons