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GXF Handler - When parsing using locus tag - duplicate are not removed. #7

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Juke34 opened this issue Apr 18, 2019 · 2 comments
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GXF Handler - When parsing using locus tag - duplicate are not removed. #7

Juke34 opened this issue Apr 18, 2019 · 2 comments

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@Juke34
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Juke34 commented Apr 18, 2019

see RAST gff annotation
@sanyalab
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While running "gff3_sp_keep_longest_isoform.pl" I am getting the following error
Can't use an undefined value as an ARRAY reference at /anno/sanyalab/SOFTWARE/GAAS/annotation/BILS/Handler/GXFhandler.pm line 1293

I have attached a small chunk of the file giving the problem. Please advice.
ptn_genes_modi.txt

@Juke34 Juke34 mentioned this issue Apr 29, 2019
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@Juke34
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Juke34 commented May 6, 2019

fixed

@Juke34 Juke34 closed this as completed May 6, 2019
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@Juke34 @sanyalab