NCCR-SYNAPSY: Neuroimaging Data Management Training Resources

Collection of training resources to support the standardization of neuroimaging data inside NCCR SYNAPSY

Presentations

Monday, 08 March 2021

Introduction to BIDS and Datalad (view RevealJS / PDF)

Wednesday, 21 April 2021

Standardization of neuroimaging (MRI/EEG) data inside Synapsy (view RevealJS / PDF)

Tuesday, 31 August 2021

SYNAPSY neuroimaging data management plan: a Recap (view RevealJS / PDF)
A BIDS MRI dataset usacase: SYNAPSY early-psychosis dataset (view RevealJS / PDF)
Introduction to NeuroDataPub (view RevealJS / PDF)

Thursday, 14 October 2021 - Annual Meeting in Les Diablerets

Standardization of Neuroimaging Data Management inside Synapsy (view RevealJS)

Recommended tutorials

From DICOM to BIDS dataset using Heudiconv (by James Kent): https://www.youtube.com/watch?v=O1kZAuR7E00
Introduction to Datalad (by Adina Wagner): https://www.youtube.com/watch?v=QsAqnP7TwyY

Other great resources

Training modules by the ReproNim Team (https://www.repronim.org/teach.html):
- Reproducibility Basics Module (http://www.repronim.org/module-reproducible-basics/) to learn more about core tools such as shell, version control, etc. and how these tools could promote reproducibility in your research
- Data and the FAIR principles Module (http://www.repronim.org/module-FAIR-data/) to learn more about FAIR and BIDS
Lessons by Software Carpentry (https://software-carpentry.org/lessons/) about basic lab skills for research computing such as the "Version Control with Git" lesson (https://swcarpentry.github.io/git-novice/)

Need help?

Please create a new discussion with your question in Discussions.

Authors

Sebastien Tourbier (@sebastientourbier), Connectomics Lab, Lausanne University and Hospital Center (UNIL_CHUV), Switzerland

License

CC-BY-4.0 licensed

Copyright (C) 2021 Lausanne University and Hospital Center (UNIL_CHUV), Switzerland